# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yyvA 131 2.03e-16 a.4.5.69 124254 2fswA 107 3.20e-16 a.4.5.69 134042 2hztA 107 3.93e-16 1z7uA 112 4.81e-16 a.4.5.69 124672 2f2eA 146 1.14e-15 a.4.5.69 132808 1ub9A 100 1.51e-05 a.4.5.28 99159 3bpvA 138 6.90e-05 2pexA 153 1.20e-04 1z91A 147 2.47e-04 a.4.5.28 124736 2fbhA 146 2.74e-04 a.4.5.28 133245 3bj6A 152 5.66e-04 1i1gA 141 6.38e-04 a.4.5.32,d.58.4.2 65982,65983 2a61A 145 6.83e-04 a.4.5.28 126187 2fbiA 142 7.45e-04 a.4.5.28 133246 2ethA 154 8.60e-04 a.4.5.28 132358 2hr3A 147 1.04e-03 a.4.5.28 136678 3b73A 111 1.53e-03 1lnwA 147 1.64e-03 a.4.5.28 78104 2d1hA 109 2.25e-03 a.4.5.50 131125 1smtA 122 2.26e-03 1smtA a.4.5.5 16109 1r1tA 122 2.49e-03 a.4.5.5 104769 3ctaA 230 4.76e-03 2h09A 155 5.27e-03 3cdhA 155 5.63e-03 1bjaA 95 5.76e-03 1bjaA a.4.5.9 16122 1sfxA 109 5.83e-03 a.4.5.50 105505 2bv6A 142 7.46e-03 3cjnA 162 8.96e-03 3bddA 142 9.31e-03 1i1sA 96 9.49e-03 1bjaA a.4.5.9 16124 2gxgA 146 9.72e-03 2pn6A 150 9.96e-03 1f5tA 121 1.19e-02 1bi0 a.4.5.24,a.76.1.1 16203,18409 1xmaA 145 1.32e-02 a.4.5.61 115477 1r1uA 106 1.36e-02 a.4.5.5 104771 2e7xA 150 1.38e-02 1s3jA 155 1.44e-02 a.4.5.28 98437 2eshA 118 1.47e-02 a.4.5.61 132325 2b0lA 102 1.70e-02 a.4.5.66 127641 2fbkA 181 1.71e-02 a.4.5.28 133247 2co5A 99 1.76e-02 2p5vA 162 1.88e-02 1lj9A 144 2.76e-02 a.4.5.28 78035 1ucrA 78 2.82e-02 a.4.5.45 99188 3broA 141 3.01e-02 1b1bA 140 3.03e-02 1bi0 a.4.5.24,a.76.1.1 16215,18421 1j75A 67 3.17e-02 a.4.5.19 62673 2nnnA 140 3.84e-02 2cg4A 152 4.97e-02 a.4.5.32,d.58.4.2 130417,130418 2cyyA 151 6.22e-02 a.4.5.32,d.58.4.2 131028,131029 1ri7A 171 6.69e-02 a.4.5.32,d.58.4.2 97504,97505 2e1nA 138 7.95e-02 1tw3A 360 8.40e-02 a.4.5.29,c.66.1.12 107373,107374 2oqgA 114 9.14e-02 2pg4A 95 9.42e-02 1bi0 226 9.93e-02 1bi0 3bjaA 139 1.17e-01 1yg2A 179 1.38e-01 a.4.5.61 116681 1fx7A 230 1.62e-01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 1.63e-01 1bi0 2dtrA 226 1.63e-01 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qvoA 95 1.69e-01 2obpA 96 1.72e-01 1tbxA 99 1.91e-01 a.4.5.48 106748 2gqqA 163 2.26e-01 2fu4A 83 2.40e-01 2p8tA 200 2.69e-01 2heoA 67 3.04e-01 1e2xA 243 3.22e-01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1mkmA 249 3.67e-01 a.4.5.33,d.110.2.2 79242,79243 1hw1A 239 3.71e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1on2A 142 3.74e-01 a.4.5.24,a.76.1.1 87103,87104 2ax6A 256 3.79e-01 a.123.1.1 127479 1q1hA 110 3.87e-01 a.4.5.41 95580 2sttA 96 3.87e-01 1awcA a.4.5.21 16163 1t98A 287 4.04e-01 a.4.5.65,a.47.6.1 119196,119197 2dbbA 151 4.21e-01 3boqA 160 4.51e-01 1jgsA 138 4.71e-01 a.4.5.28 66683 2ev0A 142 5.19e-01 a.4.5.24,a.76.1.1 132413,132414 2rdpA 150 5.46e-01 1gvjA 146 5.53e-01 a.4.5.21 90525 2dqlA 115 5.63e-01 1fliA 98 5.86e-01 1awcA a.4.5.21 16160 2ax8A 256 6.03e-01 1xmkA 79 9.08e-01 a.4.5.19 122165 2qz8A 149 9.70e-01 2qq9A 226 9.78e-01 1rkbA 173 9.81e-01 c.37.1.1 111854 2ia0A 171 1.00e+00 1mzbA 136 1.01e+00 a.4.5.42 91497 1y0uA 96 1.02e+00 a.4.5.5 116310 2ax9A 256 1.07e+00 a.123.1.1 127481 2hgcA 102 1.10e+00 1yo5C 97 1.12e+00 a.4.5.21 123768 1c0wA 225 1.29e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1tz9A 367 1.35e+00 c.1.15.6 107466 1bc8C 93 1.51e+00 1awcA a.4.5.21 16168 1jhfA 202 1.53e+00 a.4.5.2,b.87.1.1 63057,63058 2jtvA 65 1.60e+00 1lea 84 1.65e+00 1lea 2ivmA 150 2.05e+00 2di3A 239 2.18e+00 1duxC 94 2.39e+00 1awcA a.4.5.21 16170 1sfuA 75 2.82e+00 a.4.5.19 105503 1hbxG 157 2.85e+00 1awcA a.4.5.21 60934 1zybA 232 3.03e+00 a.4.5.4,b.82.3.2 125815,125816 1xn7A 78 3.52e+00 a.4.5.62 115576 1t7rA 269 3.63e+00 a.123.1.1 106635 1z1dA 103 3.73e+00 a.4.5.16 124351 2v79A 135 3.77e+00 2cfxA 144 3.78e+00 a.4.5.32,d.58.4.2 130395,130396 1dpuA 99 3.89e+00 1dpuA a.4.5.16 16150 1j5yA 187 3.95e+00 a.4.5.1,d.94.2.1 71592,71593 1p4xA 250 4.05e+00 a.4.5.28,a.4.5.28 87784,87785 2nyxA 168 4.16e+00 1wj5A 120 4.65e+00 a.4.5.59 114692 1ixcA 294 5.26e+00 a.4.5.37,c.94.1.1 83764,83765 2pjpA 121 5.40e+00 2ek5A 129 5.50e+00 1i7fA 292 5.65e+00 1i7fA d.193.1.1 61888 2aaxA 275 6.25e+00 3bwgA 239 6.35e+00 1a79A 171 6.80e+00 1a79A c.52.2.1,d.75.1.1 33340,39739 1hw7A 255 7.56e+00 1i7fA d.193.1.1 61297 1i06A 180 7.70e+00 1mup b.60.1.1 27131 1bkdS 439 7.90e+00 1bkdS a.117.1.1 19111 1bw6A 56 8.41e+00 1bw6A a.4.1.7 16052 2nyiA 195 8.49e+00 1fp1D 372 8.51e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 2dqrA 122 8.90e+00 1bm9A 122 9.04e+00 1bm9A a.4.5.7 16116 2yxyA 115 9.41e+00 2ee9A 95 9.44e+00 1xx7A 184 9.69e+00 a.211.1.1 116143 1awcA 110 1.01e+01 1awcA a.4.5.21 16167 1jv4A 162 1.15e+01 b.60.1.1 67343 1zndA 174 1.18e+01 b.60.1.1 125380 2qwwA 154 1.20e+01 2rkhA 180 1.21e+01 1m32A 366 1.23e+01 c.67.1.3 78508 1a28A 256 1.29e+01 1a28A a.123.1.1 19290 1sr7A 259 1.44e+01 a.123.1.1 105957 2fa5A 162 1.47e+01 1wtjA 343 1.47e+01 1qy1A 174 1.48e+01 b.60.1.1 96568 1u2wA 122 1.48e+01 a.4.5.5 119487 1iz0A 302 1.48e+01 b.35.1.2,c.2.1.1 83821,83822 2ppwA 216 1.56e+01 1dbhA 354 1.60e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2h41A 95 1.68e+01 2oexA 351 1.70e+01 1r7jA 95 1.75e+01 a.4.5.49 104836 1b9mA 265 1.76e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1bia 321 1.77e+01 1bia 1biaA 321 1.77e+01 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1x19A 359 1.83e+01 1ulyA 192 1.85e+01 a.4.5.58 113297 1cquA 56 1.85e+01 d.100.1.1 70073 2oczA 231 1.86e+01 1oyiA 82 1.89e+01 a.4.5.19 93729 1v2yA 105 1.91e+01 d.15.1.1 100275 2hs5A 239 1.95e+01 1sqnA 261 2.03e+01 a.123.1.1 105944 1nd4A 264 2.05e+01 d.144.1.6 91815 3bk6A 188 2.07e+01 1ybzA 91 2.09e+01 a.130.1.1 122901 2nyuA 196 2.32e+01 1i6xA 209 2.35e+01 a.4.5.4,b.82.3.2 83673,83674 2hbaA 52 2.38e+01 2cgpA 210 2.43e+01 2cgpA a.4.5.4,b.82.3.2 16102,28141 1kmiZ 214 2.44e+01 h.4.11.1 72752 2dlbA 80 2.45e+01 1xqaA 113 2.48e+01 d.32.1.2 115837 1k78A 149 2.49e+01 a.4.1.5,a.4.1.5 68255,68256 1mup 166 2.52e+01 1mup 1gz0A 253 2.60e+01 c.116.1.1,d.79.3.3 76391,76392 1q7zA 566 2.61e+01 c.1.21.2,c.1.26.1 96090,96091 1vqsA 116 2.64e+01 d.58.4.13 114019 1b56A 135 2.76e+01 b.60.1.2 27183 2h6bA 250 2.80e+01 2fnaA 357 2.80e+01 a.4.5.11,c.37.1.20 133809,133810 2hoeA 380 2.84e+01 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1e3yA 104 2.85e+01 1fadA a.77.1.2 18426 1i4yA 114 2.90e+01 2mhr a.24.4.1 61738 2gmgA 105 2.92e+01 2bdtA 189 2.98e+01 c.37.1.25 128344 1aua 296 3.03e+01 1aua 1auaA 296 3.03e+01 a.5.3.1,c.13.1.1 16290,30882 2j22A 148 3.09e+01 3rubS 123 3.09e+01 1rboC d.73.1.1 39616 1g6nA 210 3.11e+01 2cgpA a.4.5.4,b.82.3.2 16100,28139 2jt1A 77 3.18e+01 1uwzA 136 3.20e+01 c.97.1.1 108081 3bbpD 71 3.22e+01 1fadA 99 3.23e+01 1fadA a.77.1.2 18428 1g8tA 245 3.25e+01 1qaeA d.4.1.2 37137 1edhA 226 3.26e+01 1edhA b.1.6.1,b.1.6.1 22198,22199 1pqnA 127 3.34e+01 c.47.1.8 95025 1rblI 109 3.35e+01 d.73.1.1 118599 1wj2A 78 3.38e+01 g.79.1.1 114689 2nr3A 183 3.40e+01 2oqqA 42 3.41e+01 2aydA 76 3.42e+01 6paxA 133 3.43e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 2ojqA 348 3.45e+01 1ql0A 241 3.46e+01 1qaeA d.4.1.2 37139 3bz6A 183 3.57e+01 1o6sB 105 3.59e+01 b.1.6.1 81096 8rucI 123 3.61e+01 1rboC d.73.1.1 39629 2cjjA 93 3.62e+01 a.4.1.3 130540 1rscI 111 3.63e+01 d.73.1.1 118620 1iktA 120 3.71e+01 d.106.1.1 66188 2rjbA 455 3.75e+01 1q77A 138 3.88e+01 c.26.2.4 96023 2omzB 105 3.99e+01 2fxtA 192 4.04e+01 1hlvA 131 4.04e+01 a.4.1.7,a.4.1.7 65854,65855 1otrA 49 4.14e+01 a.5.2.4 87413 1t6t1 118 4.18e+01 3c9uA 342 4.18e+01 2f1lA 187 4.19e+01 b.41.1.4,b.43.3.4 132780,132781 1z6rA 406 4.20e+01 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2d7nA 93 4.21e+01 b.1.18.10 131322 1id3B 102 4.34e+01 a.22.1.1 66113 1fp2A 352 4.50e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1hw5A 210 4.52e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2agaA 190 4.53e+01 1r9wA 145 4.57e+01 d.89.1.2 97264 1tuzA 118 4.65e+01 a.39.1.7 112670 1eejA 216 4.66e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1fpxA 352 4.83e+01 1fpxA a.4.5.29,c.66.1.12 59950,59951 2pijA 67 4.91e+01 3bofA 566 4.92e+01 1qzzA 374 4.97e+01 a.4.5.29,c.66.1.12 96719,96720 1nqzA 194 5.08e+01 d.113.1.1 86077 1ft9A 222 5.13e+01 1ft9A a.4.5.4,b.82.3.1 16107,28131 1zxoA 291 5.32e+01 c.55.1.5,c.55.1.5 125784,125785 1eokA 290 5.40e+01 1eokA c.1.8.5 28991 1hryA 76 5.41e+01 1hryA a.21.1.1 16429 2ilrA 264 5.42e+01 1okrA 123 5.45e+01 a.4.5.39 93269 1unkA 87 5.51e+01 1cei a.28.2.1 16935 2iugA 120 5.60e+01 1q3lA 69 5.63e+01 b.34.13.2 111652 1pq1A 196 5.66e+01 f.1.4.1 94986 3brjA 175 5.84e+01 1y9wA 140 5.94e+01 d.108.1.1 122783 1nkpA 88 6.18e+01 a.38.1.1 80573 1j6rA 214 6.20e+01 d.173.1.2 71598 1dbgA 506 6.31e+01 1dbgA b.80.1.4 28033 1sd4A 126 6.37e+01 a.4.5.39 105428 1nxuA 333 6.38e+01 c.122.1.1 86389 1xviA 275 6.41e+01 c.108.1.10 116088 1dboA 506 6.42e+01 1dbgA b.80.1.4 28034 1b59A 370 6.47e+01 1bn5 a.4.5.25,d.127.1.1 16225,41162 1j47A 85 6.59e+01 a.21.1.1 66373 2ev1A 222 6.65e+01 2bbsA 290 6.70e+01 2qkoA 215 6.82e+01 2qgnA 322 6.89e+01 1t5jA 313 6.91e+01 a.209.1.1 99125 2masA 314 6.97e+01 2masA c.70.1.1 34810 2dk5A 91 6.98e+01 2e18A 257 7.07e+01 1py0A 125 7.08e+01 b.6.1.1 111645 2akaA 776 7.26e+01 3c05A 62 7.27e+01 1kkdA 102 7.38e+01 f.15.1.1 68668 1v86A 95 7.39e+01 d.15.1.1 108421 2ia2A 265 7.56e+01 1oflA 481 7.65e+01 b.80.1.4 103934 2dm6A 333 7.66e+01 b.35.1.2,c.2.1.1 131567,131568 1hh2P 344 7.69e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1mrzA 293 7.79e+01 b.43.5.1,c.26.1.3 91452,91453 2pq8A 278 7.82e+01 1pazA 123 7.93e+01 b.6.1.1 22878 1cf7B 95 7.93e+01 1cf7B a.4.5.17 16152 1dd3A 128 7.99e+01 1dd3C a.108.1.1,d.45.1.1 19031,38760