# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2hztA 107 6.96e-15 1yyvA 131 1.35e-14 a.4.5.69 124254 1z7uA 112 3.57e-14 a.4.5.69 124672 2fswA 107 4.27e-14 a.4.5.69 134042 2f2eA 146 1.24e-13 a.4.5.69 132808 1ub9A 100 1.63e-04 a.4.5.28 99159 3bpvA 138 2.32e-04 3bj6A 152 6.59e-04 2a61A 145 7.78e-04 a.4.5.28 126187 2pexA 153 8.37e-04 2fbhA 146 9.07e-04 a.4.5.28 133245 1r1tA 122 1.07e-03 a.4.5.5 104769 2ethA 154 1.16e-03 a.4.5.28 132358 1smtA 122 1.64e-03 1smtA a.4.5.5 16109 2fbiA 142 2.65e-03 a.4.5.28 133246 1z91A 147 2.71e-03 a.4.5.28 124736 1lnwA 147 5.08e-03 a.4.5.28 78104 1bjaA 95 5.78e-03 1bjaA a.4.5.9 16122 2oqgA 114 6.38e-03 3cjnA 162 7.04e-03 2gxgA 146 7.14e-03 2hr3A 147 9.76e-03 a.4.5.28 136678 1r1uA 106 1.02e-02 a.4.5.5 104771 3bddA 142 1.10e-02 2d1hA 109 1.17e-02 a.4.5.50 131125 3b73A 111 1.39e-02 3cdhA 155 1.40e-02 2eshA 118 1.54e-02 a.4.5.61 132325 1lj9A 144 2.11e-02 a.4.5.28 78035 1s3jA 155 2.12e-02 a.4.5.28 98437 3broA 141 2.14e-02 1sfxA 109 2.15e-02 a.4.5.50 105505 2h09A 155 2.34e-02 2fbkA 181 2.46e-02 a.4.5.28 133247 2bv6A 142 3.87e-02 3ctaA 230 4.07e-02 2co5A 99 4.07e-02 1tw3A 360 4.57e-02 a.4.5.29,c.66.1.12 107373,107374 2cg4A 152 5.89e-02 a.4.5.32,d.58.4.2 130417,130418 1xmaA 145 6.35e-02 a.4.5.61 115477 1ucrA 78 8.15e-02 a.4.5.45 99188 1yg2A 179 8.94e-02 a.4.5.61 116681 1mzbA 136 8.97e-02 a.4.5.42 91497 3boqA 160 1.19e-01 2p5vA 162 1.29e-01 2nnnA 140 1.31e-01 1j75A 67 1.40e-01 a.4.5.19 62673 2b0lA 102 1.53e-01 a.4.5.66 127641 2e1nA 138 1.55e-01 2v7fA 150 1.59e-01 1jgsA 138 1.70e-01 a.4.5.28 66683 2pn6A 150 1.81e-01 1hw1A 239 1.86e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1u2wA 122 1.92e-01 a.4.5.5 119487 3bjaA 139 2.14e-01 2e7xA 150 2.37e-01 2fu4A 83 2.47e-01 2fa5A 162 2.55e-01 2pg4A 95 2.56e-01 1fx7A 230 2.58e-01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qwwA 154 2.86e-01 1ri7A 171 3.22e-01 a.4.5.32,d.58.4.2 97504,97505 2cyyA 151 3.30e-01 a.4.5.32,d.58.4.2 131028,131029 1tbxA 99 3.57e-01 a.4.5.48 106748 2rdpA 150 3.92e-01 1t98A 287 3.96e-01 a.4.5.65,a.47.6.1 119196,119197 2dtr 226 4.33e-01 1bi0 2dtrA 226 4.33e-01 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2nyxA 168 4.34e-01 1y0uA 96 4.50e-01 a.4.5.5 116310 2obpA 96 4.72e-01 2p8tA 200 4.76e-01 2qq9A 226 5.57e-01 2dqlA 115 5.68e-01 1gvjA 146 6.33e-01 a.4.5.21 90525 2v79A 135 6.38e-01 2heoA 67 6.51e-01 2hgcA 102 8.71e-01 1xmkA 79 8.99e-01 a.4.5.19 122165 1on2A 142 1.03e+00 a.4.5.24,a.76.1.1 87103,87104 1mkmA 249 1.04e+00 a.4.5.33,d.110.2.2 79242,79243 2ax6A 256 1.14e+00 a.123.1.1 127479 1rkbA 173 1.14e+00 c.37.1.1 111854 2qz8A 149 1.24e+00 1sfuA 75 1.32e+00 a.4.5.19 105503 2ev0A 142 1.53e+00 a.4.5.24,a.76.1.1 132413,132414 2cfxA 144 1.68e+00 a.4.5.32,d.58.4.2 130395,130396 1jhfA 202 1.69e+00 a.4.5.2,b.87.1.1 63057,63058 1tz9A 367 1.74e+00 c.1.15.6 107466 1wj5A 120 1.74e+00 a.4.5.59 114692 1dpuA 99 1.80e+00 1dpuA a.4.5.16 16150 1zybA 232 1.85e+00 a.4.5.4,b.82.3.2 125815,125816 2ek5A 129 1.89e+00 1p4xA 250 1.90e+00 a.4.5.28,a.4.5.28 87784,87785 2ax8A 256 1.97e+00 2ivmA 150 1.97e+00 2gqqA 163 1.97e+00 1z1dA 103 1.98e+00 a.4.5.16 124351 2qvoA 95 2.02e+00 1r7jA 95 2.07e+00 a.4.5.49 104836 1q1hA 110 2.09e+00 a.4.5.41 95580 2di3A 239 2.10e+00 1x19A 359 2.63e+00 2ia0A 171 2.67e+00 2ax9A 256 2.93e+00 a.123.1.1 127481 1yo5C 97 3.11e+00 a.4.5.21 123768 1okrA 123 3.49e+00 a.4.5.39 93269 2k2rA 129 3.54e+00 2dbbA 151 3.82e+00 3brjA 175 3.97e+00 1a79A 171 4.27e+00 1a79A c.52.2.1,d.75.1.1 33340,39739 2jtvA 65 4.34e+00 1bkdS 439 4.51e+00 1bkdS a.117.1.1 19111 1ixcA 294 4.74e+00 a.4.5.37,c.94.1.1 83764,83765 2nr3A 183 5.72e+00 1b9mA 265 5.97e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 3bz6A 183 6.32e+00 1bm9A 122 6.38e+00 1bm9A a.4.5.7 16116 2jt1A 77 6.44e+00 1bc8C 93 6.74e+00 1awcA a.4.5.21 16168 1i06A 180 6.85e+00 1mup b.60.1.1 27131 2ia2A 265 7.10e+00 1eejA 216 7.50e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1oyiA 82 8.27e+00 a.4.5.19 93729 1iz0A 302 8.38e+00 b.35.1.2,c.2.1.1 83821,83822 1t7rA 269 8.44e+00 a.123.1.1 106635 1zndA 174 8.49e+00 b.60.1.1 125380 3bwgA 239 8.77e+00 2pjpA 121 9.24e+00 1eokA 290 9.32e+00 1eokA c.1.8.5 28991 1k78A 149 9.34e+00 a.4.1.5,a.4.1.5 68255,68256 1ojqA 212 9.60e+00 d.166.1.1 93146 6paxA 133 9.71e+00 6paxA a.4.1.5,a.4.1.5 64758,64759 1xviA 275 1.04e+01 c.108.1.10 116088 1qy1A 174 1.07e+01 b.60.1.1 96568 1sd4A 126 1.09e+01 a.4.5.39 105428 2pgbB 259 1.20e+01 1mup 166 1.20e+01 1mup 2cf8H 257 1.22e+01 2dqrA 122 1.24e+01 1jv4A 162 1.25e+01 b.60.1.1 67343 2h6bA 250 1.26e+01 1fp1D 372 1.26e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 3c7jA 237 1.27e+01 1g8iA 190 1.30e+01 1rec a.39.1.5 60363 1q7zA 566 1.38e+01 c.1.21.2,c.1.26.1 96090,96091 2agaA 190 1.40e+01 2bbsA 290 1.40e+01 2gmgA 105 1.40e+01 2rkhA 180 1.42e+01 1xx7A 184 1.44e+01 a.211.1.1 116143 1d0yA 761 1.53e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1t6sA 162 1.55e+01 a.4.5.60,a.4.5.60 112271,112272 1w9iA 770 1.56e+01 2v8pA 271 1.56e+01 2b5tI 432 1.57e+01 e.1.1.1 127905 2avdA 219 1.57e+01 c.66.1.1 127377 1h8dH 260 1.59e+01 5ptp 1vzqH 250 1.59e+01 1m32A 366 1.59e+01 c.67.1.3 78508 2pq8A 278 1.69e+01 2hs5A 239 1.72e+01 2bvrH 252 1.81e+01 3by6A 126 1.88e+01 3rubS 123 1.91e+01 1rboC d.73.1.1 39616 2fxtA 192 1.94e+01 1vr1H 261 2.02e+01 5ptp 2ii0A 490 2.04e+01 a.117.1.1 137425 1j5yA 187 2.10e+01 a.4.5.1,d.94.2.1 71592,71593 2hr0A 645 2.15e+01 1ulyA 192 2.22e+01 a.4.5.58 113297 1lvk 762 2.27e+01 1lvk 1bia 321 2.31e+01 1bia 1biaA 321 2.31e+01 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1yzbA 182 2.31e+01 2e18A 257 2.32e+01 1i6xA 209 2.36e+01 a.4.5.4,b.82.3.2 83673,83674 1fadA 99 2.37e+01 1fadA a.77.1.2 18428 2hoeA 380 2.38e+01 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1xn7A 78 2.46e+01 a.4.5.62 115576 2akaA 776 2.48e+01 1wtjA 343 2.65e+01 2iu1A 208 2.65e+01 1ql0A 241 2.67e+01 1qaeA d.4.1.2 37139 1qzzA 374 2.72e+01 a.4.5.29,c.66.1.12 96719,96720 2pbqA 178 2.77e+01 1j5uA 136 2.83e+01 d.208.1.1 71584 2r2zA 93 2.98e+01 1nrvA 105 3.02e+01 d.93.1.1 86126 1jvwA 167 3.05e+01 d.26.1.1 71907 1b74A 254 3.05e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 2f1lA 187 3.17e+01 b.41.1.4,b.43.3.4 132780,132781 1fp2A 352 3.19e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1vj1A 363 3.29e+01 b.35.1.2,c.2.1.1 100794,100795 2dk5A 91 3.31e+01 2fe3A 145 3.36e+01 1pq1A 196 3.37e+01 f.1.4.1 94986 2g9wA 138 3.38e+01 2cjjA 93 3.39e+01 a.4.1.3 130540 2pefA 373 3.41e+01 1xmiA 291 3.50e+01 c.37.1.12 115489 2g7uA 257 3.50e+01 1hlvA 131 3.50e+01 a.4.1.7,a.4.1.7 65854,65855 2nyuA 196 3.51e+01 2v75A 104 3.72e+01 3bofA 566 3.76e+01 1iktA 120 3.82e+01 d.106.1.1 66188 1s2wA 295 3.82e+01 c.1.12.7 98407 2cveA 191 3.86e+01 d.14.1.11,d.58.11.2 130869,130870 2rjbA 455 3.94e+01 2oz8A 389 3.98e+01 2a6tA 271 4.23e+01 a.242.1.1,d.113.1.7 126309,126310 1zavA 180 4.39e+01 1r0wA 286 4.47e+01 c.37.1.12 96754 1vi0A 206 4.58e+01 a.4.1.9,a.121.1.1 100720,100721 2r3sA 335 4.60e+01 2z0dA 357 4.78e+01 1cojA 212 4.82e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1dbgA 506 4.84e+01 1dbgA b.80.1.4 28033 1dboA 506 4.87e+01 1dbgA b.80.1.4 28034 1xd7A 145 4.93e+01 a.4.5.55 109566 1w9hA 427 5.05e+01 c.55.3.10 120785 1rblI 109 5.09e+01 d.73.1.1 118599 1we0A 187 5.31e+01 c.47.1.10 120930 2qgnA 322 5.50e+01 1rscI 111 5.51e+01 d.73.1.1 118620 1py0A 125 5.51e+01 b.6.1.1 111645 1f3uB 171 5.60e+01 1f3uB b.65.1.1 27525 1nqzA 194 5.67e+01 d.113.1.1 86077 1p5sA 203 5.68e+01 a.40.1.1 94147 1wy0A 342 5.73e+01 1c4zA 358 5.75e+01 1c4zA d.148.1.1 41766 2givA 295 5.89e+01 d.108.1.1 135253 2bzgA 232 5.92e+01 c.66.1.36 129559 1b56A 135 5.94e+01 b.60.1.2 27183 1v2yA 105 5.95e+01 d.15.1.1 100275 1n13B 113 5.96e+01 2fsuA 210 5.97e+01 8rucI 123 5.98e+01 1rboC d.73.1.1 39629 2h41A 95 5.99e+01 1unkA 87 6.06e+01 1cei a.28.2.1 16935 1cf7B 95 6.13e+01 1cf7B a.4.5.17 16152 2j01P 150 6.24e+01 1uwzA 136 6.32e+01 c.97.1.1 108081 2bdtA 189 6.40e+01 c.37.1.25 128344 2aaxA 275 6.53e+01 1pazA 123 6.58e+01 b.6.1.1 22878 1nvvS 481 6.59e+01 a.117.1.1 86279 2ob9A 130 6.74e+01 2pfzA 301 6.77e+01 1w9yA 319 6.79e+01 b.82.2.1 120801 1i4yA 114 6.79e+01 2mhr a.24.4.1 61738 2pzeA 229 6.83e+01 1hw5A 210 6.86e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1af3 196 6.97e+01 1maz 2q37A 181 7.04e+01 2od5A 116 7.15e+01 1o6sB 105 7.19e+01 b.1.6.1 81096 2dk8A 81 7.20e+01 2elfA 370 7.22e+01 1hstA 90 7.45e+01 1hstA a.4.5.13 16140 1j6rA 214 7.45e+01 d.173.1.2 71598 2ojqA 348 7.48e+01 1wsuA 124 7.61e+01 a.4.5.35,a.4.5.35 121245,121246 1p2xA 159 7.62e+01 a.40.1.1 104062 2fz0A 149 7.71e+01 1on3A 523 7.73e+01 c.14.1.4,c.14.1.4 87107,87108 2v3sA 96 7.77e+01 2b7aA 293 7.79e+01 1r9wA 145 7.90e+01 d.89.1.2 97264 1rkuA 206 7.91e+01 c.108.1.11 97627 1maz 221 7.91e+01 1maz