# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.18e-27 c.107.1.1 68027 1i74A 309 1.76e-26 c.107.1.1 61867 2eb0A 307 1.46e-21 1wpnA 188 1.75e-19 c.107.1.1 114826 1ir6A 424 2.68e-10 c.107.1.2 71342 2qb7A 397 3.17e-08 1uwcA 261 2.827 c.69.1.17 100101 1tib 269 3.635 2q28A 564 3.757 2djiA 590 5.157 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2bjhA 260 6.076 1jpkA 388 6.320 c.1.22.1 67026 2q71A 356 7.226 1yt8A 539 7.336 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2c31A 568 8.092 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1v8bA 479 8.982 c.2.1.4,c.23.12.3 113564,113565 1sviA 195 9.250 c.37.1.8 106048 1r8eA 278 10.11 a.6.1.3,d.60.1.1 104843,104844 3brsA 289 10.21 1xwfA 431 10.36 c.2.1.4,c.23.12.3 122392,122393 1zcjA 463 10.46 1uswA 260 10.82 c.69.1.17 99895 1ra0A 430 14.43 b.92.1.2,c.1.9.5 111756,111757 1d2mA 665 15.15 c.37.1.19,c.37.1.19 32417,32418 1gt6A 269 16.50 c.69.1.17 76342 8abp 306 18.28 2bm8A 236 18.68 c.66.1.50 128771 3bzwA 274 23.10 2ejaA 338 23.88 1qz9A 416 24.07 c.67.1.3 96621 3b9pA 297 24.10 1th8B 116 25.37 c.13.2.1 106909 3cogA 403 25.41 1gpjA 404 26.40 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 8abpA 306 27.69 c.93.1.1 35647 1xqwA 293 29.14 2o35A 105 29.84 1fc4A 401 29.92 c.67.1.4 59760 1poxA 585 31.81 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1j6uA 469 31.87 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1lfwA 470 34.76 c.56.5.4,d.58.19.1 77942,77943 2cyaA 364 36.06 1e5eA 404 36.68 c.67.1.3 59265 1jeoA 180 37.25 c.80.1.3 66611 1b4aA 149 38.00 a.4.5.3,d.74.2.1 16088,39721 1eejA 216 39.31 c.47.1.9,d.17.3.1 33057,38071 2fz4A 237 39.59 c.37.1.19 134419 1c4oA 664 40.13 c.37.1.19,c.37.1.19 32415,32416 2ez9A 603 40.29 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2z61A 370 45.13 1puiA 210 46.02 c.37.1.8 88292 2yyyA 343 48.04 2oq1A 254 48.47 d.93.1.1,d.93.1.1 139220,139221 1abaA 87 48.73 c.47.1.1 32760 1qwgA 251 49.12 c.1.27.1 96473 1cl1A 395 49.56 c.67.1.3 34395 1mtzA 293 49.84 c.69.1.7 79467 1pjqA 457 50.14 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2p97A 201 52.90 2o2iA 300 53.95 1vmeA 410 54.50 c.23.5.1,d.157.1.3 108893,108894 2chgA 226 57.67 2cxxA 190 57.89 c.37.1.8 131013 1uirA 314 60.76 c.66.1.17 99429 1m3sA 186 63.82 c.80.1.3 78573 1ybhA 590 63.94 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1tdj 514 64.27 1ynuA 473 67.06 c.67.1.4 123762 1rkuA 206 67.10 c.108.1.11 97627 1h75A 81 69.09 c.47.1.1 60716 1rhs 296 69.31 1n4aA 252 69.85 c.92.2.2 85317 2nw0A 189 72.04 2i3dA 249 74.91 1cr6B 554 78.88 c.69.1.11,c.108.1.2 34688,43338 1jf9A 408 80.11 c.67.1.3 62931 1xo0A 324 81.05 a.60.9.1,d.163.1.1 115674,115675 2psdA 318 83.20 2j0fA 482 83.76 1fcjA 322 87.57 c.79.1.1 35289