# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.43e-29 c.107.1.1 68027 1i74A 309 4.02e-28 c.107.1.1 61867 2eb0A 307 1.18e-22 1wpnA 188 1.65e-20 c.107.1.1 114826 1ir6A 424 2.25e-11 c.107.1.2 71342 2qb7A 397 6.10e-09 1yt8A 539 1.495 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2c31A 568 1.517 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2djiA 590 1.735 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2q28A 564 1.823 1uwcA 261 2.338 c.69.1.17 100101 2ez9A 603 3.097 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1v8bA 479 3.199 c.2.1.4,c.23.12.3 113564,113565 1tib 269 3.309 1poxA 585 3.901 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2bjhA 260 6.913 1uswA 260 7.331 c.69.1.17 99895 1d2mA 665 9.206 c.37.1.19,c.37.1.19 32417,32418 2oq1A 254 10.11 d.93.1.1,d.93.1.1 139220,139221 1r8eA 278 10.32 a.6.1.3,d.60.1.1 104843,104844 1jpkA 388 10.75 c.1.22.1 67026 1gt6A 269 11.72 c.69.1.17 76342 1ybhA 590 11.93 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1xqwA 293 12.47 1xwfA 431 12.91 c.2.1.4,c.23.12.3 122392,122393 2q71A 356 14.45 1th8B 116 15.92 c.13.2.1 106909 1ra0A 430 16.04 b.92.1.2,c.1.9.5 111756,111757 1tdj 514 16.25 3brsA 289 16.40 3b9pA 297 16.49 1mtzA 293 22.10 c.69.1.7 79467 8abp 306 23.50 1b4aA 149 23.53 a.4.5.3,d.74.2.1 16088,39721 1j6uA 469 24.06 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2bm8A 236 24.11 c.66.1.50 128771 1vmeA 410 24.59 c.23.5.1,d.157.1.3 108893,108894 2fz4A 237 25.03 c.37.1.19 134419 1uirA 314 27.13 c.66.1.17 99429 1sviA 195 27.24 c.37.1.8 106048 1c4oA 664 30.57 c.37.1.19,c.37.1.19 32415,32416 1zcjA 463 31.04 1fc4A 401 32.37 c.67.1.4 59760 1gpjA 404 33.09 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2yyyA 343 34.01 2p97A 201 34.29 3cogA 403 34.94 1e5eA 404 35.32 c.67.1.3 59265 1rkuA 206 39.26 c.108.1.11 97627 1xwiA 322 39.30 8abpA 306 40.00 c.93.1.1 35647 1a81A 254 41.36 d.93.1.1,d.93.1.1 40507,40508 1eejA 216 42.83 c.47.1.9,d.17.3.1 33057,38071 1r26A 125 43.56 c.47.1.1 96847 2o35A 105 45.35 1lfwA 470 45.56 c.56.5.4,d.58.19.1 77942,77943 1qz9A 416 46.11 c.67.1.3 96621 3bzwA 274 46.52 1m6nA 802 46.72 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1jeoA 180 47.28 c.80.1.3 66611 1vjoA 393 47.38 c.67.1.3 100827 3d64A 494 47.78 2o2iA 300 50.96 2bykB 128 51.03 a.22.1.3 129487 1cl1A 395 51.05 c.67.1.3 34395 2ejaA 338 51.05 1gc0A 398 52.50 c.67.1.3 70168 1iz7A 295 55.54 c.69.1.8 76982 2i3dA 249 56.01 2chgA 226 57.54 1ojqA 212 57.55 d.166.1.1 93146 1bn7A 294 63.37 c.69.1.8 34677 2psdA 318 64.34 1dnpA 471 68.27 a.99.1.1,c.28.1.1 18775,31630 1ibjA 464 68.49 c.67.1.3 62162 1m3sA 186 69.55 c.80.1.3 78573 1lgyA 269 69.66 c.69.1.17 34758 1w5fA 353 69.73 c.32.1.1,d.79.2.1 114247,114248 1tibA 269 70.86 c.69.1.17 34738 3c3yA 237 74.13 2ihtA 573 75.92 1n4aA 252 77.38 c.92.2.2 85317 1fcjA 322 78.62 c.79.1.1 35289 3c2bA 221 78.69 1h75A 81 79.94 c.47.1.1 60716 1c1dA 355 80.89 c.2.1.7,c.58.1.1 30270,33918 1pjqA 457 82.22 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1fohA 664 85.56 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2qvbA 297 85.94 1vjgA 218 86.86 c.23.10.6 100810 1sxjA 511 87.26 a.80.1.1,c.37.1.20 106081,106082 2nw0A 189 89.39 2p71A 132 89.73 a.39.2.1 139516