# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.03e-33 c.107.1.1 68027 1i74A 309 8.69e-33 c.107.1.1 61867 2eb0A 307 2.35e-26 1wpnA 188 5.31e-24 c.107.1.1 114826 1ir6A 424 2.03e-12 c.107.1.2 71342 2qb7A 397 2.66e-09 1yt8A 539 0.9479 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1vmeA 410 1.666 c.23.5.1,d.157.1.3 108893,108894 2djiA 590 2.541 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2ez9A 603 2.854 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ybhA 590 2.969 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1sviA 195 4.517 c.37.1.8 106048 1jpkA 388 4.750 c.1.22.1 67026 1uwcA 261 4.856 c.69.1.17 100101 1poxA 585 5.713 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2q71A 356 7.670 1v8bA 479 8.575 c.2.1.4,c.23.12.3 113564,113565 1cl1A 395 8.855 c.67.1.3 34395 1tib 269 8.981 3brsA 289 11.08 1xwfA 431 11.45 c.2.1.4,c.23.12.3 122392,122393 1fc4A 401 11.82 c.67.1.4 59760 2bjhA 260 13.63 1uswA 260 13.95 c.69.1.17 99895 1qpbA 563 14.29 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2o35A 105 14.76 1gt6A 269 14.93 c.69.1.17 76342 1qz9A 416 14.98 c.67.1.3 96621 1th8B 116 15.63 c.13.2.1 106909 1gc0A 398 15.74 c.67.1.3 70168 2fz4A 237 15.82 c.37.1.19 134419 1ra0A 430 16.20 b.92.1.2,c.1.9.5 111756,111757 1zcjA 463 16.36 1puiA 210 16.81 c.37.1.8 88292 2chgA 226 17.12 1j6uA 469 18.20 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2q28A 564 18.80 1gpjA 404 19.23 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1r8eA 278 19.75 a.6.1.3,d.60.1.1 104843,104844 1cl2A 395 19.99 c.67.1.3 34397 1xqwA 293 20.42 1tedA 393 23.92 c.95.1.2 106807 2oq1A 254 24.29 d.93.1.1,d.93.1.1 139220,139221 1tdj 514 25.36 3b9pA 297 25.44 1fcjA 322 26.46 c.79.1.1 35289 1gm5A 780 26.60 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1d2mA 665 27.88 c.37.1.19,c.37.1.19 32417,32418 1oasA 322 27.99 c.79.1.1 35293 1jr3A 373 28.02 a.80.1.1,c.37.1.20 63245,63246 1lfwA 470 28.26 c.56.5.4,d.58.19.1 77942,77943 3bzwA 274 28.98 2fq6A 415 29.91 c.67.1.3 133939 2p97A 201 29.99 2r6r1 338 30.33 1mtzA 293 30.79 c.69.1.7 79467 1mf7A 194 31.29 c.62.1.1 84937 1vjoA 393 31.45 c.67.1.3 100827 1khdA 345 32.27 a.46.2.1,c.27.1.1 77400,77401 3cogA 403 33.00 1e5eA 404 34.18 c.67.1.3 59265 1ojqA 212 35.11 d.166.1.1 93146 2ihtA 573 40.82 8abp 306 41.40 1vkiA 181 41.94 d.116.1.1 108664 1sxjA 511 42.61 a.80.1.1,c.37.1.20 106081,106082 2bm8A 236 44.93 c.66.1.50 128771 1pv9A 348 46.88 c.55.2.1,d.127.1.1 95157,95158 1knwA 425 50.17 b.49.2.3,c.1.6.1 90969,90970 2gufA 594 50.31 f.4.3.3 135736 1y4iA 398 51.75 c.67.1.3 122619 1crxA 322 53.18 a.60.9.1,d.163.1.1 18097,42157 2q4aA 330 53.18 b.82.2.8 139839 1rkuA 206 54.41 c.108.1.11 97627 8abpA 306 54.50 c.93.1.1 35647 1z6nA 167 55.13 c.47.1.1 124530 2qalM 117 55.87 1fsyA 358 56.21 e.3.1.1 60016 1xo0A 324 56.52 a.60.9.1,d.163.1.1 115674,115675 2psdA 318 58.38 1yksA 440 59.62 c.37.1.14,c.37.1.14 123561,123562 1jf9A 408 59.86 c.67.1.3 62931 1fohA 664 60.06 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1fjgM 126 60.93 a.156.1.1 16293 2qmaA 497 62.38 1rq2A 382 62.91 c.32.1.1,d.79.2.1 105048,105049 1b24A 188 63.04 d.95.2.1,d.95.2.1 40573,40574 1o4sA 389 63.71 c.67.1.1 86620 1a49A 530 65.59 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2dxqA 150 68.10 1m3sA 186 68.94 c.80.1.3 78573 1zckA 154 70.07 1b8oA 284 71.28 c.56.2.1 33762 1in4A 334 72.63 a.4.5.11,c.37.1.20 62597,62598 1aihA 170 75.71 d.163.1.1 42149 1xccA 220 76.49 c.47.1.10 115113 2ejaA 338 76.58 2c31A 568 77.16 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1nqeA 594 78.98 f.4.3.3 86027 1rhs 296 82.16 1a81A 254 84.95 d.93.1.1,d.93.1.1 40507,40508 1qwgA 251 85.55 c.1.27.1 96473 2rslA 140 85.59 c.53.1.1 33345 2nw0A 189 86.86 1vquA 374 87.66 1qf9A 194 88.63 c.37.1.1 31848 1pjqA 457 89.35 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768