# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.62e-32 c.107.1.1 68027 1i74A 309 1.60e-31 c.107.1.1 61867 2eb0A 307 2.84e-26 1wpnA 188 1.57e-22 c.107.1.1 114826 1ir6A 424 1.36e-11 c.107.1.2 71342 2qb7A 397 1.27e-09 1yt8A 539 1.058 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2q28A 564 1.696 2djiA 590 2.143 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2ez9A 603 2.478 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2q71A 356 2.847 1sviA 195 3.301 c.37.1.8 106048 2oq1A 254 3.371 d.93.1.1,d.93.1.1 139220,139221 2c31A 568 3.794 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1jpkA 388 4.328 c.1.22.1 67026 1eejA 216 5.183 c.47.1.9,d.17.3.1 33057,38071 1poxA 585 5.235 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1puiA 210 6.649 c.37.1.8 88292 1b4aA 149 8.697 a.4.5.3,d.74.2.1 16088,39721 1r8eA 278 9.248 a.6.1.3,d.60.1.1 104843,104844 2ejaA 338 9.413 1uwcA 261 9.750 c.69.1.17 100101 1a81A 254 10.19 d.93.1.1,d.93.1.1 40507,40508 1ybhA 590 11.58 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1v8bA 479 11.65 c.2.1.4,c.23.12.3 113564,113565 1tib 269 11.92 2p97A 201 12.10 1lfwA 470 14.73 c.56.5.4,d.58.19.1 77942,77943 3brsA 289 16.27 2bjhA 260 16.48 3bzwA 274 16.53 1ra0A 430 19.82 b.92.1.2,c.1.9.5 111756,111757 2cxxA 190 23.59 c.37.1.8 131013 1gpjA 404 23.78 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1vmeA 410 23.87 c.23.5.1,d.157.1.3 108893,108894 1zcjA 463 25.73 1th8B 116 28.40 c.13.2.1 106909 1fc4A 401 30.30 c.67.1.4 59760 1qwgA 251 31.94 c.1.27.1 96473 2cyaA 364 35.38 1gt6A 269 36.94 c.69.1.17 76342 1j6uA 469 37.33 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1uswA 260 39.43 c.69.1.17 99895 2bm8A 236 40.31 c.66.1.50 128771 2o35A 105 40.75 3b9pA 297 40.76 1qz9A 416 40.89 c.67.1.3 96621 1xwfA 431 44.21 c.2.1.4,c.23.12.3 122392,122393 2ffiA 288 44.98 c.1.9.15 133385 1oywA 523 45.20 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2bykB 128 46.84 a.22.1.3 129487 1efaA 333 50.41 a.35.1.5,c.93.1.1 17106,35691 1rkuA 206 50.96 c.108.1.11 97627 2ihtA 573 52.78 1xqwA 293 52.87 1fcjA 322 53.19 c.79.1.1 35289 1ozhA 566 56.43 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 8abpA 306 57.44 c.93.1.1 35647 1mtzA 293 62.24 c.69.1.7 79467 2psdA 318 62.49 1b24A 188 64.37 d.95.2.1,d.95.2.1 40573,40574 3bueA 79 64.48 1n4aA 252 64.62 c.92.2.2 85317 2d5cA 263 67.47 2p71A 132 68.28 a.39.2.1 139516 1zmaA 118 70.36 c.47.1.1 125354 1aiaA 396 70.36 c.67.1.1 34306 2chgA 226 72.28 1rhs 296 72.56 2z61A 370 73.99 2p5mA 83 75.21 1abaA 87 76.55 c.47.1.1 32760 2zfzA 79 78.90 8abp 306 79.28 1pbe 394 82.26 1vmkA 277 83.28 c.56.2.1 113680 1cg2A 393 87.75 c.56.5.4,d.58.19.1 33844,39360