# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.29e-31 c.107.1.1 68027 1i74A 309 1.32e-30 c.107.1.1 61867 2eb0A 307 1.73e-25 1wpnA 188 4.73e-22 c.107.1.1 114826 1ir6A 424 1.17e-11 c.107.1.2 71342 2qb7A 397 1.86e-09 2q28A 564 1.403 1yt8A 539 1.732 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2djiA 590 2.901 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2q71A 356 3.167 2c31A 568 4.096 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1sviA 195 4.296 c.37.1.8 106048 2p97A 201 4.577 1jpkA 388 4.734 c.1.22.1 67026 1eejA 216 4.799 c.47.1.9,d.17.3.1 33057,38071 2oq1A 254 5.413 d.93.1.1,d.93.1.1 139220,139221 2ejaA 338 5.420 2ez9A 603 5.746 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1v8bA 479 6.474 c.2.1.4,c.23.12.3 113564,113565 1tib 269 6.502 1poxA 585 7.164 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uwcA 261 7.904 c.69.1.17 100101 1r8eA 278 8.110 a.6.1.3,d.60.1.1 104843,104844 1puiA 210 8.140 c.37.1.8 88292 3brsA 289 10.00 1zcjA 463 11.65 1ra0A 430 11.73 b.92.1.2,c.1.9.5 111756,111757 2bjhA 260 12.34 1lfwA 470 13.99 c.56.5.4,d.58.19.1 77942,77943 1vmeA 410 15.37 c.23.5.1,d.157.1.3 108893,108894 1b4aA 149 18.42 a.4.5.3,d.74.2.1 16088,39721 3bzwA 274 19.25 1xwfA 431 20.81 c.2.1.4,c.23.12.3 122392,122393 1ybhA 590 20.86 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1gt6A 269 21.51 c.69.1.17 76342 1gpjA 404 22.26 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1a81A 254 24.26 d.93.1.1,d.93.1.1 40507,40508 8abpA 306 29.03 c.93.1.1 35647 1th8B 116 30.90 c.13.2.1 106909 2ffiA 288 31.04 c.1.9.15 133385 1uswA 260 31.69 c.69.1.17 99895 1xqwA 293 32.60 1qwgA 251 32.74 c.1.27.1 96473 2cxxA 190 33.26 c.37.1.8 131013 2cyaA 364 33.56 3b9pA 297 34.34 1rkuA 206 35.64 c.108.1.11 97627 2d5cA 263 36.08 2o35A 105 36.27 2bm8A 236 36.47 c.66.1.50 128771 1j6uA 469 38.76 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1fc4A 401 41.98 c.67.1.4 59760 1mtzA 293 42.28 c.69.1.7 79467 8abp 306 43.79 1qz9A 416 44.68 c.67.1.3 96621 1oywA 523 45.42 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1aiaA 396 46.61 c.67.1.1 34306 1fcjA 322 49.58 c.79.1.1 35289 1uirA 314 51.31 c.66.1.17 99429 2fz4A 237 54.41 c.37.1.19 134419 2psdA 318 58.22 2chgA 226 58.28 2nw0A 189 64.25 1jeoA 180 67.07 c.80.1.3 66611 2jfgA 445 67.21 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2z61A 370 69.56 1rhs 296 71.78 2bykB 128 72.10 a.22.1.3 129487 2yyyA 343 74.64 1oasA 322 75.63 c.79.1.1 35293 1e5eA 404 76.72 c.67.1.3 59265 1n4aA 252 79.28 c.92.2.2 85317 2dri 271 79.91 1cl1A 395 81.90 c.67.1.3 34395 3bueA 79 83.68 1k0fA 277 84.10 c.92.2.2 71974 1abaA 87 84.17 c.47.1.1 32760 1cg2A 393 86.46 c.56.5.4,d.58.19.1 33844,39360 1efaA 333 88.01 a.35.1.5,c.93.1.1 17106,35691 1vjoA 393 89.23 c.67.1.3 100827 1vmkA 277 89.56 c.56.2.1 113680 1xo0A 324 89.60 a.60.9.1,d.163.1.1 115674,115675