# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.00e-30 c.107.1.1 68027 1i74A 309 3.20e-29 c.107.1.1 61867 2eb0A 307 2.11e-24 1wpnA 188 4.03e-21 c.107.1.1 114826 1ir6A 424 7.49e-11 c.107.1.2 71342 2qb7A 397 3.49e-09 2q28A 564 1.931 1yt8A 539 1.945 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2q71A 356 3.170 2djiA 590 3.390 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2c31A 568 3.653 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2p97A 201 3.819 1jpkA 388 4.451 c.1.22.1 67026 2ez9A 603 5.610 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1v8bA 479 6.056 c.2.1.4,c.23.12.3 113564,113565 1tib 269 6.475 1sviA 195 6.776 c.37.1.8 106048 2oq1A 254 7.348 d.93.1.1,d.93.1.1 139220,139221 1uwcA 261 7.730 c.69.1.17 100101 2ejaA 338 9.766 1r8eA 278 9.926 a.6.1.3,d.60.1.1 104843,104844 1puiA 210 10.11 c.37.1.8 88292 1ra0A 430 10.12 b.92.1.2,c.1.9.5 111756,111757 1poxA 585 11.28 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1eejA 216 12.13 c.47.1.9,d.17.3.1 33057,38071 2bjhA 260 12.76 3brsA 289 13.28 1zcjA 463 14.57 3bzwA 274 14.84 1ybhA 590 16.50 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1lfwA 470 18.90 c.56.5.4,d.58.19.1 77942,77943 1b4aA 149 19.91 a.4.5.3,d.74.2.1 16088,39721 1vmeA 410 20.89 c.23.5.1,d.157.1.3 108893,108894 8abpA 306 21.15 c.93.1.1 35647 1gt6A 269 22.33 c.69.1.17 76342 1xwfA 431 23.38 c.2.1.4,c.23.12.3 122392,122393 1gpjA 404 23.83 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1a81A 254 26.74 d.93.1.1,d.93.1.1 40507,40508 1qz9A 416 27.77 c.67.1.3 96621 1th8B 116 27.99 c.13.2.1 106909 8abp 306 34.73 1uswA 260 35.17 c.69.1.17 99895 1fc4A 401 36.79 c.67.1.4 59760 1mtzA 293 37.58 c.69.1.7 79467 1qwgA 251 38.83 c.1.27.1 96473 1uirA 314 40.64 c.66.1.17 99429 2o35A 105 43.47 1xqwA 293 43.66 1oywA 523 44.88 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2cyaA 364 45.52 2cxxA 190 46.17 c.37.1.8 131013 1j6uA 469 46.33 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2bm8A 236 46.64 c.66.1.50 128771 3b9pA 297 50.91 2ffiA 288 53.02 c.1.9.15 133385 2fz4A 237 53.91 c.37.1.19 134419 1rkuA 206 57.02 c.108.1.11 97627 2z61A 370 57.03 2yyyA 343 58.92 2jfgA 445 60.33 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2chgA 226 63.93 2d5cA 263 65.54 1zmaA 118 65.81 c.47.1.1 125354 1fcjA 322 67.10 c.79.1.1 35289 1efaA 333 67.96 a.35.1.5,c.93.1.1 17106,35691 1aiaA 396 68.42 c.67.1.1 34306 1qf9A 194 73.72 c.37.1.1 31848 2nw0A 189 74.23 2psdA 318 79.26 1n4aA 252 82.27 c.92.2.2 85317 1y7oA 218 83.57 c.14.1.1 122701 1jeoA 180 86.23 c.80.1.3 66611 2dri 271 86.44