# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.68e-30 c.107.1.1 68027 1i74A 309 2.64e-29 c.107.1.1 61867 2eb0A 307 4.40e-24 1wpnA 188 6.37e-22 c.107.1.1 114826 1ir6A 424 4.70e-11 c.107.1.2 71342 2qb7A 397 5.70e-09 1sviA 195 0.3445 c.37.1.8 106048 1yt8A 539 1.249 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 3b9pA 297 2.334 1v8bA 479 2.656 c.2.1.4,c.23.12.3 113564,113565 1a81A 254 3.194 d.93.1.1,d.93.1.1 40507,40508 2oq1A 254 3.862 d.93.1.1,d.93.1.1 139220,139221 1uwcA 261 4.297 c.69.1.17 100101 2p97A 201 4.672 2qsfX 171 5.108 1puiA 210 5.714 c.37.1.8 88292 1xwiA 322 6.086 2ez9A 603 6.531 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1jpkA 388 6.669 c.1.22.1 67026 2q71A 356 7.082 1r8eA 278 7.692 a.6.1.3,d.60.1.1 104843,104844 1xwfA 431 9.819 c.2.1.4,c.23.12.3 122392,122393 2q28A 564 9.822 2ihtA 573 10.32 1vmeA 410 10.35 c.23.5.1,d.157.1.3 108893,108894 1ybhA 590 10.36 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1uswA 260 11.71 c.69.1.17 99895 2djiA 590 12.13 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2c31A 568 12.31 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2bjhA 260 12.97 1rlmA 271 17.00 c.108.1.10 111860 1poxA 585 23.76 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1lgyA 269 26.24 c.69.1.17 34758 2psdA 318 26.35 2chgA 226 26.93 2ipxA 233 28.85 1tib 269 29.03 1gt6A 269 29.89 c.69.1.17 76342 1bvwA 360 29.92 c.6.1.1 30668 1lfwA 470 31.41 c.56.5.4,d.58.19.1 77942,77943 2yy3A 91 31.73 1t1vA 93 33.33 c.47.1.14 106278 1oc7A 364 35.47 c.6.1.1 86794 1sjiA 350 36.49 1eyrA 228 38.48 c.68.1.13 34514 1h75A 81 41.20 c.47.1.1 60716 1th8B 116 43.30 c.13.2.1 106909 1oywA 523 43.61 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2bvwA 362 43.69 c.6.1.1 30666 1j6uA 469 46.68 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1eziA 228 50.12 c.68.1.13 34512 2d5cA 263 51.02 2ejaA 338 51.28 2uz1A 563 51.51 8abpA 306 53.71 c.93.1.1 35647 1rkuA 206 54.22 c.108.1.11 97627 2dstA 131 55.36 2e85A 159 55.77 1w5fA 353 56.29 c.32.1.1,d.79.2.1 114247,114248 1yzxA 226 58.96 1wyzA 242 60.40 c.90.1.1 121471 3c57A 95 62.46 2cxxA 190 62.62 c.37.1.8 131013 1aazA 87 62.77 c.47.1.1 32761 1hnnA 282 62.80 c.66.1.15 65895 3bgeA 201 63.21 1vjgA 218 63.72 c.23.10.6 100810 1qwgA 251 65.66 c.1.27.1 96473 2gcuA 245 70.35 1dv0A 47 70.68 a.5.2.1 16289 1r4wA 226 71.19 c.47.1.13 97050 1jeoA 180 71.34 c.80.1.3 66611 3cgxA 242 72.65 1ep3B 262 72.93 b.43.4.2,c.25.1.3 25664,31554 1ydnA 295 73.52 1uirA 314 77.22 c.66.1.17 99429 1fukA 165 78.86 c.37.1.19 32409 1tdj 514 79.24 1iz7A 295 81.72 c.69.1.8 76982 1eejA 216 82.86 c.47.1.9,d.17.3.1 33057,38071 2hhjA 267 82.98 c.60.1.1 136497 2bwjA 199 83.67 1m6iA 493 84.38 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1fcjA 322 84.78 c.79.1.1 35289 1yc5A 246 89.10 c.31.1.5 122910