# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 5.03e-29 c.107.1.1 68027 1i74A 309 3.92e-28 c.107.1.1 61867 2eb0A 307 6.34e-23 1wpnA 188 2.04e-20 c.107.1.1 114826 1ir6A 424 1.18e-10 c.107.1.2 71342 2qb7A 397 1.07e-08 2djiA 590 0.3760 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2ez9A 603 0.3834 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1yt8A 539 1.477 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1jpkA 388 3.900 c.1.22.1 67026 1uwcA 261 3.910 c.69.1.17 100101 2q71A 356 4.218 2oq1A 254 4.729 d.93.1.1,d.93.1.1 139220,139221 2bjhA 260 5.133 2p97A 201 5.748 1sviA 195 6.367 c.37.1.8 106048 1poxA 585 6.705 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ybhA 590 6.707 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2q28A 564 7.212 1tib 269 7.233 3bzwA 274 10.94 1uswA 260 11.14 c.69.1.17 99895 1ozhA 566 12.39 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1th8B 116 12.71 c.13.2.1 106909 1v8bA 479 13.26 c.2.1.4,c.23.12.3 113564,113565 1zcjA 463 14.53 2uz1A 563 14.93 2c31A 568 15.94 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1gpjA 404 17.20 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3b9pA 297 18.08 1ra0A 430 18.52 b.92.1.2,c.1.9.5 111756,111757 1b4aA 149 18.60 a.4.5.3,d.74.2.1 16088,39721 2ihtA 573 24.40 1gt6A 269 25.21 c.69.1.17 76342 1a81A 254 25.72 d.93.1.1,d.93.1.1 40507,40508 1lfwA 470 25.84 c.56.5.4,d.58.19.1 77942,77943 1xqwA 293 26.16 2ejaA 338 27.25 1d2mA 665 27.47 c.37.1.19,c.37.1.19 32417,32418 2nw0A 189 28.77 2o35A 105 30.69 1r8eA 278 31.50 a.6.1.3,d.60.1.1 104843,104844 2psdA 318 31.86 1eejA 216 32.24 c.47.1.9,d.17.3.1 33057,38071 1vmeA 410 33.85 c.23.5.1,d.157.1.3 108893,108894 1xwfA 431 34.67 c.2.1.4,c.23.12.3 122392,122393 1mtzA 293 40.21 c.69.1.7 79467 2o2iA 300 40.55 1qz9A 416 42.09 c.67.1.3 96621 1qwgA 251 45.67 c.1.27.1 96473 2bm8A 236 47.53 c.66.1.50 128771 1efaA 333 48.50 a.35.1.5,c.93.1.1 17106,35691 1j6uA 469 50.06 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2bykB 128 53.52 a.22.1.3 129487 1knwA 425 53.72 b.49.2.3,c.1.6.1 90969,90970 1puiA 210 54.70 c.37.1.8 88292 1ynuA 473 55.77 c.67.1.4 123762 1fcjA 322 59.53 c.79.1.1 35289 2qvbA 297 60.32 1b24A 188 61.62 d.95.2.1,d.95.2.1 40573,40574 1pfkA 320 61.84 c.89.1.1 35575 1rkuA 206 62.77 c.108.1.11 97627 1rhs 296 63.99 3c6cA 316 66.85 2ftsA 419 68.57 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1c4oA 664 70.77 c.37.1.19,c.37.1.19 32415,32416 2bkmA 128 76.51 2rslA 140 79.39 c.53.1.1 33345 1umkA 275 79.82 b.43.4.2,c.25.1.1 113312,113313 1jtkA 136 81.67 c.97.1.1 71862 1bplB 294 83.28 b.71.1.1 27716 2qsfX 171 83.93 2p5mA 83 84.72