# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 5.08e-24 c.107.1.1 68027 1i74A 309 1.60e-22 c.107.1.1 61867 2eb0A 307 1.71e-18 1wpnA 188 2.42e-16 c.107.1.1 114826 1ir6A 424 1.74e-08 c.107.1.2 71342 2qb7A 397 3.92e-07 1zcjA 463 0.07561 2ez9A 603 0.6418 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ozhA 566 1.681 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2ffiA 288 2.909 c.1.9.15 133385 2dr1A 386 3.271 2djiA 590 3.402 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1hnjA 317 3.666 c.95.1.2,c.95.1.2 35969,35970 1yt8A 539 3.760 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2o7cA 398 4.597 2napA 723 4.751 b.52.2.2,c.81.1.1 26926,35334 1a81A 254 4.875 d.93.1.1,d.93.1.1 40507,40508 2fq6A 415 5.411 c.67.1.3 133939 1ji2A 585 5.821 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2bjhA 260 6.974 1uwcA 261 7.105 c.69.1.17 100101 1gc0A 398 7.656 c.67.1.3 70168 1eejA 216 7.846 c.47.1.9,d.17.3.1 33057,38071 3cogA 403 9.108 2i6uA 307 9.210 1kqfB 294 9.459 d.58.1.5,f.23.22.1 75900,75901 2yw2A 424 9.499 7aatA 401 9.598 c.67.1.1 34250 2vafA 378 10.49 1z45A 699 10.60 b.30.5.4,c.2.1.2 124427,124428 1hn9A 317 10.86 c.95.1.2,c.95.1.2 35977,35978 2hdhA 293 10.92 a.100.1.3,c.2.1.6 18795,30199 3bu3A 306 11.44 1z63A 500 12.41 c.37.1.19,c.37.1.19 124502,124503 2ihtA 573 13.00 1sxjA 511 13.14 a.80.1.1,c.37.1.20 106081,106082 2q28A 564 15.66 1qwgA 251 15.80 c.1.27.1 96473 1ei6A 406 15.84 c.76.1.4 90443 1akaA 401 17.03 c.67.1.1 34258 1sviA 195 17.04 c.37.1.8 106048 2nxwA 565 17.13 1vemA 516 17.96 b.3.1.1,c.1.8.1 120021,120022 1dqrA 557 18.06 c.80.1.2 35305 1tib 269 18.28 2oq1A 254 18.75 d.93.1.1,d.93.1.1 139220,139221 1qf6A 642 19.18 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 3bijA 285 19.36 1pvdA 537 20.68 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1jpkA 388 20.95 c.1.22.1 67026 2q71A 356 21.54 1ra0A 430 22.04 b.92.1.2,c.1.9.5 111756,111757 1t9bA 677 22.68 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1q74A 303 23.29 c.134.1.1 96019 1reqB 637 24.07 c.1.19.1,c.23.6.1 29621,31248 1m3sA 186 24.27 c.80.1.3 78573 2fnuA 375 24.27 c.67.1.4 133831 1th8B 116 24.34 c.13.2.1 106909 1in4A 334 24.46 a.4.5.11,c.37.1.20 62597,62598 2rdyA 803 24.50 2i5gA 325 25.27 2cunA 410 26.06 1gpl 432 27.11 2f4nA 273 27.25 1gq2A 555 27.48 c.2.1.7,c.58.1.3 70308,70309 8abpA 306 28.36 c.93.1.1 35647 1bn6A 294 28.97 c.69.1.8 34678 2ajfA 597 29.27 d.92.1.5 126882 2fgeA 995 29.80 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 8abp 306 30.27 1lk9A 448 30.33 c.67.1.1 78057 1lv7A 257 30.79 c.37.1.20 78232 2q4aA 330 31.64 b.82.2.8 139839 1xi9A 406 31.91 c.67.1.1 115355 2p97A 201 33.08 3b9jC 763 34.14 1cv2A 296 34.29 c.69.1.8 34680 1a1vA 476 34.35 c.37.1.14,c.37.1.14 32467,32468 2al2A 436 35.01 c.1.11.1,d.54.1.1 126953,126954 1mtzA 293 35.01 c.69.1.7 79467 1vmeA 410 36.00 c.23.5.1,d.157.1.3 108893,108894 2hoxA 427 37.04 c.67.1.1 136644 2b3yA 888 37.59 c.8.2.1,c.83.1.1 127803,127804 1vm7A 311 37.59 c.72.1.1 108884 1qycA 308 37.64 c.2.1.2 96581 3clqA 421 39.02 1pjqA 457 40.48 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1lam 484 40.81 1x6vA 630 41.70 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2dvzA 314 42.66 2ohhA 404 43.53 1eudA 311 47.85 c.2.1.8,c.23.4.1 30312,31140 2pqmA 343 48.84 1b4aA 149 49.21 a.4.5.3,d.74.2.1 16088,39721 3c1oA 321 50.24 3b9pA 297 50.24 1fc4A 401 52.46 c.67.1.4 59760 1mj5A 302 53.14 c.69.1.8 91285 1ybhA 590 53.28 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1gl6A 436 53.52 c.37.1.11 70259 1fc6A 388 54.32 b.36.1.3,c.14.1.2 64738,64739 2v3vA 723 54.41 1puiA 210 54.58 c.37.1.8 88292 1j32A 388 56.17 c.67.1.1 77067 2an1A 292 56.37 1yaaA 412 57.19 c.67.1.1 34280 1m2kA 249 57.87 c.31.1.5 84754 1jscA 630 58.06 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1r6vA 671 58.25 c.41.1.1 111710 1pvvA 315 58.34 c.78.1.1,c.78.1.1 95190,95191 1eblA 317 58.94 c.95.1.2,c.95.1.2 35973,35974 1gt6A 269 59.02 c.69.1.17 76342 1eg5A 384 60.46 c.67.1.3 34429 1iqpA 327 61.26 a.80.1.1,c.37.1.20 62649,62650 1k6wA 426 61.68 b.92.1.2,c.1.9.5 68236,68237 1wqaA 455 61.83 2g30A 258 62.44 b.1.10.1,d.105.1.1 134546,134547 1efaA 333 62.52 a.35.1.5,c.93.1.1 17106,35691 1qpbA 563 62.73 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3bzwA 274 63.37 1bpwA 503 64.33 c.82.1.1 35365 1zp4A 304 64.61 1xwl 580 64.66 1jyeA 349 65.05 c.93.1.1 67455 2grvA 621 66.74 1ve5A 311 67.48 c.79.1.1 120013 2aqpA 164 67.70 2shpA 525 69.33 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1hr6B 443 70.05 d.185.1.1,d.185.1.1 61166,61167 1elyA 449 70.08 c.76.1.1 35028 1bn7A 294 70.40 c.69.1.8 34677 1q06A 135 70.97 a.6.1.3 95493 1f0yA 302 71.28 a.100.1.3,c.2.1.6 18793,30197 2c31A 568 71.91 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2aznA 219 72.40 c.71.1.2 127608 1g38A 393 72.50 c.66.1.27,d.287.1.1 111567,111568 1ti6A 875 72.95 b.52.2.2,c.81.1.1 106974,106975 1pc3A 350 75.49 c.94.1.1 104102 2z61A 370 76.31 3c86A 328 76.32 1zejA 293 76.58 2d2jA 329 77.26 c.1.9.3 131175 3beoA 375 77.37 1y0pA 571 78.33 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1cl2A 395 81.35 c.67.1.3 34397 3c10A 423 81.49 1rlmA 271 81.49 c.108.1.10 111860 1b26A 416 82.26 c.2.1.7,c.58.1.1 30232,33880 1ecxA 384 83.13 c.67.1.3 34431 2zg5A 397 83.66 2rslA 140 84.99 c.53.1.1 33345 2e9xC 219 85.67 2z07A 420 88.49