# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 9.28e-29 c.107.1.1 68027 1i74A 309 8.34e-28 c.107.1.1 61867 2eb0A 307 6.09e-23 1wpnA 188 2.54e-20 c.107.1.1 114826 1ir6A 424 1.88e-10 c.107.1.2 71342 2qb7A 397 7.81e-09 2ez9A 603 0.2229 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2djiA 590 0.2863 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1yt8A 539 0.5896 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1ybhA 590 2.005 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2p97A 201 2.891 1uwcA 261 2.973 c.69.1.17 100101 1poxA 585 3.000 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1tib 269 3.693 2bjhA 260 3.736 1jpkA 388 5.551 c.1.22.1 67026 2q71A 356 5.892 1sviA 195 6.105 c.37.1.8 106048 2q28A 564 6.710 1ozhA 566 7.910 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1zcjA 463 7.992 1uswA 260 8.975 c.69.1.17 99895 2oq1A 254 9.145 d.93.1.1,d.93.1.1 139220,139221 1v8bA 479 10.05 c.2.1.4,c.23.12.3 113564,113565 1ra0A 430 10.66 b.92.1.2,c.1.9.5 111756,111757 1eejA 216 12.39 c.47.1.9,d.17.3.1 33057,38071 2c31A 568 13.42 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1gt6A 269 13.47 c.69.1.17 76342 2uz1A 563 15.76 1gpjA 404 17.75 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1d2mA 665 18.02 c.37.1.19,c.37.1.19 32417,32418 1th8B 116 18.41 c.13.2.1 106909 3b9pA 297 20.75 1xqwA 293 22.54 2o35A 105 24.18 1r8eA 278 24.70 a.6.1.3,d.60.1.1 104843,104844 1qz9A 416 24.73 c.67.1.3 96621 1xwfA 431 24.88 c.2.1.4,c.23.12.3 122392,122393 2ihtA 573 26.18 1mtzA 293 29.26 c.69.1.7 79467 1lfwA 470 29.68 c.56.5.4,d.58.19.1 77942,77943 3bzwA 274 31.06 2ejaA 338 32.32 1j6uA 469 33.53 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1rhs 296 35.02 1ynuA 473 35.94 c.67.1.4 123762 2bm8A 236 37.76 c.66.1.50 128771 1a81A 254 38.35 d.93.1.1,d.93.1.1 40507,40508 1b4aA 149 39.42 a.4.5.3,d.74.2.1 16088,39721 2nw0A 189 39.73 2psdA 318 43.29 2rslA 140 46.62 c.53.1.1 33345 1vmeA 410 47.24 c.23.5.1,d.157.1.3 108893,108894 2o2iA 300 53.21 1rkuA 206 53.99 c.108.1.11 97627 1efaA 333 58.88 a.35.1.5,c.93.1.1 17106,35691 1qwgA 251 59.32 c.1.27.1 96473 1ceo 343 61.16 1qpbA 563 61.80 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1r6uA 437 63.95 c.26.1.1 97163 2v78A 313 63.98 1cv2A 296 64.94 c.69.1.8 34680 2d6yA 202 67.02 a.4.1.9,a.121.1.1 131313,131314 1qf9A 194 69.05 c.37.1.1 31848 1c4oA 664 69.10 c.37.1.19,c.37.1.19 32415,32416 2hdhA 293 69.56 a.100.1.3,c.2.1.6 18795,30199 1i9sA 210 69.84 c.45.1.1 62099 1pfkA 320 70.40 c.89.1.1 35575 1qlwA 328 72.88 c.69.1.15 34722 2fz4A 237 74.87 c.37.1.19 134419 1akyA 220 75.57 c.37.1.1,g.41.2.1 31896,45197 2bwjA 199 75.77 2qvbA 297 76.72 1puiA 210 77.32 c.37.1.8 88292 1fcjA 322 77.38 c.79.1.1 35289 3c2bA 221 78.24 2qsfX 171 79.31 2r79A 283 80.67 1fc4A 401 80.70 c.67.1.4 59760 1jeoA 180 84.18 c.80.1.3 66611 2ftsA 419 85.61 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1q6zA 528 86.97 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1mf7A 194 87.14 c.62.1.1 84937 1b24A 188 87.26 d.95.2.1,d.95.2.1 40573,40574 1lgyA 269 87.52 c.69.1.17 34758