# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 7.01e-33 c.107.1.1 68027 1i74A 309 7.29e-32 c.107.1.1 61867 2eb0A 307 3.71e-26 1wpnA 188 1.19e-22 c.107.1.1 114826 1ir6A 424 3.17e-12 c.107.1.2 71342 2qb7A 397 1.87e-09 1yt8A 539 0.6986 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2djiA 590 3.350 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1sviA 195 3.618 c.37.1.8 106048 2q71A 356 3.800 1jpkA 388 3.878 c.1.22.1 67026 2ez9A 603 4.754 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1vmeA 410 5.267 c.23.5.1,d.157.1.3 108893,108894 2ejaA 338 6.261 2p97A 201 7.338 1uwcA 261 7.967 c.69.1.17 100101 1poxA 585 9.665 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1puiA 210 10.32 c.37.1.8 88292 2bjhA 260 11.18 1tib 269 11.74 1r8eA 278 12.43 a.6.1.3,d.60.1.1 104843,104844 2q28A 564 13.81 2oq1A 254 17.58 d.93.1.1,d.93.1.1 139220,139221 1v8bA 479 17.73 c.2.1.4,c.23.12.3 113564,113565 1a81A 254 18.88 d.93.1.1,d.93.1.1 40507,40508 1zcjA 463 19.27 1lfwA 470 22.79 c.56.5.4,d.58.19.1 77942,77943 3bzwA 274 23.61 1qwgA 251 28.57 c.1.27.1 96473 2c31A 568 33.03 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2o35A 105 33.14 1ybhA 590 34.08 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1th8B 116 34.82 c.13.2.1 106909 1gt6A 269 35.56 c.69.1.17 76342 1ra0A 430 35.87 b.92.1.2,c.1.9.5 111756,111757 1b4aA 149 37.31 a.4.5.3,d.74.2.1 16088,39721 1gpjA 404 41.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3brsA 289 42.46 1aiaA 396 42.62 c.67.1.1 34306 1rkuA 206 43.59 c.108.1.11 97627 1vjoA 393 43.84 c.67.1.3 100827 2cyaA 364 43.98 3cogA 403 45.71 1uswA 260 47.00 c.69.1.17 99895 1eejA 216 47.55 c.47.1.9,d.17.3.1 33057,38071 1j6uA 469 51.14 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1gm5A 780 56.90 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 2cxxA 190 60.37 c.37.1.8 131013 2p5mA 83 60.50 3b9pA 297 62.84 1xwfA 431 65.38 c.2.1.4,c.23.12.3 122392,122393 1fcjA 322 67.35 c.79.1.1 35289 1efaA 333 69.18 a.35.1.5,c.93.1.1 17106,35691 2bm8A 236 70.90 c.66.1.50 128771 1xmxA 385 71.66 c.52.1.26 115568 1d2mA 665 75.78 c.37.1.19,c.37.1.19 32417,32418 2o6pA 161 76.01 1fc4A 401 76.48 c.67.1.4 59760 1khdA 345 77.11 a.46.2.1,c.27.1.1 77400,77401 2chgA 226 80.01 2ftsA 419 81.32 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1bn7A 294 82.14 c.69.1.8 34677 1b24A 188 82.57 d.95.2.1,d.95.2.1 40573,40574 1mf7A 194 82.91 c.62.1.1 84937 2pezA 179 87.30 1utgA 70 89.12 a.101.1.1 18813 1xo0A 324 89.34 a.60.9.1,d.163.1.1 115674,115675 1oywA 523 89.78 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762