# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k20A	310	1.97e-27	c.107.1.1	68027
1i74A	309	1.18e-25	c.107.1.1	61867
2eb0A	307	2.15e-21		
1wpnA	188	1.30e-19	c.107.1.1	114826
1ir6A	424	1.01e-10	c.107.1.2	71342
2qb7A	397	9.26e-10		
3b9pA	297	2.656		
1v8bA	479	3.306	c.2.1.4,c.23.12.3	113564,113565
1xwiA	322	5.020		
1iz7A	295	9.072	c.69.1.8	76982
1xwfA	431	9.083	c.2.1.4,c.23.12.3	122392,122393
1vmeA	410	9.304	c.23.5.1,d.157.1.3	108893,108894
1mj5A	302	9.848	c.69.1.8	91285
1vjgA	218	10.67	c.23.10.6	100810
1uwcA	261	12.98	c.69.1.17	100101
1sviA	195	13.11	c.37.1.8	106048
1u2pA	163	13.34		
2psdA	318	14.21		
1cqwA	295	14.43	c.69.1.8	34679
1d1qA	161	14.74	c.44.1.1	32642
1p15A	253	15.02	c.45.1.2	93894
1lfwA	470	16.03	c.56.5.4,d.58.19.1	77942,77943
1xqwA	293	18.16		
1jpkA	388	18.31	c.1.22.1	67026
8abp	306	18.70		
2d5cA	263	18.92		
2q71A	356	20.20		
8abpA	306	22.32	c.93.1.1	35647
1bn7A	294	23.81	c.69.1.8	34677
1bn6A	294	24.17	c.69.1.8	34678
1yt8A	539	24.74	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2bjhA	260	25.16		
1uswA	260	25.19	c.69.1.17	99895
3c3yA	237	25.50		
1lgyA	269	26.51	c.69.1.17	34758
3c5vA	316	26.86		
1tib	269	31.95		
2oryA	346	36.90		
2oq1A	254	38.99	d.93.1.1,d.93.1.1	139220,139221
2pocA	367	39.80		
2f9zC	159	41.21		
2hhjA	267	41.80	c.60.1.1	136497
2gptA	523	47.52		
2og1A	286	50.59		
1puiA	210	50.84	c.37.1.8	88292
2q28A	564	50.89		
2e85A	159	51.21		
3brsA	289	51.26		
1fztA	211	52.37	c.60.1.1	60158
1x8hA	228	53.68	d.157.1.1	114961
1xwwA	157	54.87		
1mtzA	293	55.51	c.69.1.7	79467
2ohhA	404	56.21		
1cr6B	554	56.82	c.69.1.11,c.108.1.2	34688,43338
1oc7A	364	57.40	c.6.1.1	86794
2bvwA	362	57.54	c.6.1.1	30666
2c31A	568	59.15	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
2pujA	286	59.54		
1u2eA	289	60.38		
1b6gA	310	61.97	c.69.1.8	34661
1cv2A	296	66.11	c.69.1.8	34680
2o2iA	300	68.66		
1bvwA	360	68.90	c.6.1.1	30668
1m2xA	223	69.13	d.157.1.1	84764
1a81A	254	69.55	d.93.1.1,d.93.1.1	40507,40508
1pv1A	299	72.41	c.69.1.34	111639
1x8gA	227	73.41	d.157.1.1	114960
1r4wA	226	76.41	c.47.1.13	97050
1e58A	249	76.80	c.60.1.1	59262
1gt6A	269	78.01	c.69.1.17	76342
1a8qA	274	79.15	c.69.1.12	34702
2v03A	303	79.60		
3d64A	494	81.64		
1q6zA	528	85.90	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
2ooqA	286	86.99		
2bm8A	236	88.74	c.66.1.50	128771
1t1vA	93	89.35	c.47.1.14	106278
1tdj	514	89.39