# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.21e-29 c.107.1.1 68027 1i74A 309 1.10e-27 c.107.1.1 61867 2eb0A 307 1.13e-21 1wpnA 188 1.98e-19 c.107.1.1 114826 1ir6A 424 1.42e-11 c.107.1.2 71342 2qb7A 397 7.51e-09 2ez9A 603 0.2392 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1yt8A 539 1.245 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1poxA 585 1.294 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2djiA 590 1.369 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2oq1A 254 1.932 d.93.1.1,d.93.1.1 139220,139221 2uz1A 563 2.527 1ybhA 590 3.907 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2c31A 568 4.111 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2q28A 564 4.892 1v8bA 479 5.605 c.2.1.4,c.23.12.3 113564,113565 1a81A 254 6.773 d.93.1.1,d.93.1.1 40507,40508 8abpA 306 7.554 c.93.1.1 35647 2ihtA 573 9.167 2psdA 318 9.221 1ozhA 566 11.02 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 8abp 306 11.33 2e85A 159 13.26 1xwfA 431 14.37 c.2.1.4,c.23.12.3 122392,122393 1jpkA 388 14.94 c.1.22.1 67026 2q71A 356 20.41 1xqwA 293 21.40 1mj5A 302 21.97 c.69.1.8 91285 1qpbA 563 21.99 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1ceo 343 22.26 2i3dA 249 22.81 1ra0A 430 22.88 b.92.1.2,c.1.9.5 111756,111757 1w5fA 353 24.70 c.32.1.1,d.79.2.1 114247,114248 1vmeA 410 24.75 c.23.5.1,d.157.1.3 108893,108894 1iz7A 295 25.20 c.69.1.8 76982 1bn7A 294 28.10 c.69.1.8 34677 1cqwA 295 28.85 c.69.1.8 34679 2p97A 201 29.36 3b9pA 297 29.67 1xwiA 322 30.05 2nxwA 565 30.57 1lfwA 470 34.17 c.56.5.4,d.58.19.1 77942,77943 1uirA 314 36.58 c.66.1.17 99429 1yzxA 226 36.68 1r4wA 226 36.92 c.47.1.13 97050 1ym5A 300 42.18 1mtzA 293 42.67 c.69.1.7 79467 3bchA 253 43.51 1m6nA 802 45.26 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1r8eA 278 45.40 a.6.1.3,d.60.1.1 104843,104844 1yx1A 264 46.37 c.1.15.7 124169 2hufA 393 47.15 1eejA 216 48.01 c.47.1.9,d.17.3.1 33057,38071 1uwcA 261 48.10 c.69.1.17 100101 2o2iA 300 48.65 1oc7A 364 49.33 c.6.1.1 86794 1qnoA 344 49.50 c.1.8.3 28838 3d64A 494 49.62 2bjhA 260 52.00 1bn6A 294 55.59 c.69.1.8 34678 1gca 309 56.55 2g1iA 563 57.51 1h75A 81 58.49 c.47.1.1 60716 1b8gA 429 58.80 c.67.1.4 34499 2ejaA 338 59.96 1u2pA 163 62.71 2fvyA 309 63.56 c.93.1.1 134227 1m7yA 435 63.97 c.67.1.4 78761 1i12A 160 63.98 d.108.1.1 61515 1p9eA 331 65.66 d.157.1.5 104088 1ceoA 343 66.53 c.1.8.3 28808 1sxjA 511 68.18 a.80.1.1,c.37.1.20 106081,106082 2d5cA 263 70.54 2og1A 286 70.94 3bwaA 276 71.02 1oasA 322 72.97 c.79.1.1 35293 1bplB 294 78.55 b.71.1.1 27716 1r3nA 462 78.93 c.56.5.4,d.58.19.1 96945,96946 1bvwA 360 80.11 c.6.1.1 30668 1jeoA 180 80.77 c.80.1.3 66611 2ei9A 240 83.36 1c1dA 355 83.39 c.2.1.7,c.58.1.1 30270,33918 1xo0A 324 85.45 a.60.9.1,d.163.1.1 115674,115675 2av7A 275 88.22 b.1.1.2,d.19.1.1 127359,127360 3bevA 274 89.29