# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1i74A 309 3.22e-14 c.107.1.1 61867 1k20A 310 1.54e-13 c.107.1.1 68027 1wpnA 188 1.83e-10 c.107.1.1 114826 2eb0A 307 2.27e-09 1ir6A 424 4.94e-06 c.107.1.2 71342 2qb7A 397 7.53e-05 1sxjC 340 0.1675 a.80.1.1,c.37.1.20 106085,106086 1rq2A 382 1.686 c.32.1.1,d.79.2.1 105048,105049 2iv2X 715 2.602 b.52.2.2,c.81.1.1 137714,137715 1iqpA 327 2.803 a.80.1.1,c.37.1.20 62649,62650 2c31A 568 3.041 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2napA 723 3.126 b.52.2.2,c.81.1.1 26926,35334 1w5fA 353 3.190 c.32.1.1,d.79.2.1 114247,114248 1in6A 334 3.372 a.4.5.11,c.37.1.20 62601,62602 2q28A 564 4.583 2v3vA 723 4.666 1gtrA 553 6.682 b.53.1.2,c.26.1.1 26939,31578 1qtqA 553 8.154 b.53.1.2,c.26.1.1 26940,31579 1in4A 334 9.148 a.4.5.11,c.37.1.20 62597,62598 1korA 400 9.869 c.26.2.1,d.210.1.1 72824,72825 2r6r1 338 10.20 2f7lA 455 10.49 1vl2A 421 11.78 c.26.2.1,d.210.1.1 108708,108709 1brmA 367 12.90 c.2.1.3,d.81.1.1 30030,39945 1fmjA 351 13.63 c.37.1.5 59879 1hqcA 324 15.11 a.4.5.11,c.37.1.20 16127,32424 1psdA 409 15.16 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2uz1A 563 15.82 2z4sA 440 16.75 1cqwA 295 17.32 c.69.1.8 34679 1bn7A 294 17.65 c.69.1.8 34677 2q0lA 311 18.71 2gcuA 245 19.20 1js3A 486 19.34 c.67.1.6 67215 1ihoA 283 21.37 c.26.1.4 62390 3bh1A 507 21.98 2nqtA 352 23.23 1mb4A 370 23.67 c.2.1.3,d.81.1.1 78908,78909 2g5cA 281 24.16 a.100.1.12,c.2.1.6 134646,134647 1ryiA 382 24.39 c.3.1.2,d.16.1.3 118813,118814 1ygyA 529 24.53 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2o0mA 345 25.17 1yzyA 413 27.44 c.146.1.1 124292 1bn6A 294 30.01 c.69.1.8 34678 2yyyA 343 30.67 2okgA 255 31.43 1t4bA 367 31.73 c.2.1.3,d.81.1.1 106406,106407 2in3A 216 34.14 1b5pA 385 34.44 c.67.1.1 90403 1h0hA 977 34.52 b.52.2.2,c.81.1.1 76435,76436 1gdeA 389 36.56 c.67.1.1 60456 2bifA 469 36.67 c.37.1.7,c.60.1.4 31963,34009 1f0kA 364 36.99 c.87.1.2 35465 1n2eA 300 37.10 c.26.1.4 85268 1x6vA 630 37.15 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2rdpA 150 37.93 1jr3A 373 38.02 a.80.1.1,c.37.1.20 63245,63246 1jr3D 343 38.81 a.80.1.1,c.37.1.20 63251,63252 1ynuA 473 39.01 c.67.1.4 123762 2ijrA 300 39.76 3bk2A 562 42.99 1hy3A 294 43.19 c.37.1.5 71090 1efaA 333 43.73 a.35.1.5,c.93.1.1 17106,35691 1yovA 537 44.02 c.111.1.2 123785 2e7zA 727 44.55 2p10A 286 44.90 1yx1A 264 45.13 c.1.15.7 124169 1ofuA 320 45.18 c.32.1.1,d.79.2.1 86972,86973 1w7lA 422 47.77 c.67.1.1 109226 1sc6A 404 47.83 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1v8fA 276 47.87 c.26.1.4 100503 1aquA 297 48.66 c.37.1.5 31942 1vjrA 271 49.23 c.108.1.14 100832 2btoA 473 50.89 3bpvA 138 50.93 2hufA 393 51.71 1vpdA 299 52.03 a.100.1.1,c.2.1.6 113951,113952 3bddA 142 53.46 1bjwA 382 57.02 c.67.1.1 34349 1y8qA 346 57.83 2nyxA 168 58.09 1k2yX 463 61.19 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1xyfA 436 61.31 b.42.2.1,c.1.8.3 25577,28909 1rsgA 516 62.06 1z2lA 423 62.53 c.56.5.4,d.58.19.1 124383,124384 2chgA 226 63.35 2ivfA 976 64.54 1u2pA 163 64.57 2ethA 154 64.66 a.4.5.28 132358 2cvzA 289 66.02 a.100.1.1,c.2.1.6 130890,130891 1bifA 469 66.02 c.37.1.7,c.60.1.4 31961,34003 1s3jA 155 66.09 a.4.5.28 98437 1r45A 204 66.96 d.166.1.1 111683 1fp4A 492 68.68 c.92.2.3 76187 2a5hA 416 68.94 1yb4A 295 69.17 2cfxA 144 70.64 a.4.5.32,d.58.4.2 130395,130396 2g82A 331 71.35 c.2.1.3,d.81.1.1 134746,134747 1yqgA 263 71.95 2p5vA 162 72.46 1lnsA 763 73.85 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1qmgA 524 75.37 a.100.1.2,c.2.1.6 18785,30182 1dfoA 417 75.69 c.67.1.4 34480 1ujqA 305 76.17 c.1.12.7 99463 1qisA 396 76.38 c.67.1.1 34284 2b4rO 345 77.95 c.2.1.3,d.81.1.1 127845,127846 1sd4A 126 78.27 a.4.5.39 105428 1yizA 429 79.53 c.67.1.1 123375 1m6nA 802 79.65 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2g17A 337 80.28 c.2.1.3,d.81.1.1 134512,134513 1lnwA 147 80.60 a.4.5.28 78104 1ri7A 171 80.72 a.4.5.32,d.58.4.2 97504,97505 1g3mA 294 80.93 c.37.1.5 83268 2h3hA 313 81.89 1y56B 382 82.92 2fbiA 142 83.09 a.4.5.28 133246 1u2xA 474 83.16 c.72.1.3 107622 1cjcA 460 87.40 c.3.1.1,c.4.1.1 30319,30604 2qwwA 154 88.81 2ew2A 316 88.90 2ozpA 345 89.17 1zjjA 263 89.23 1twfK 120 89.44 d.74.3.2 112736