# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.16e-24 c.107.1.2 71342 1k20A 310 5.50e-24 c.107.1.1 68027 2eb0A 307 1.20e-21 2qb7A 397 6.20e-18 1wpnA 188 2.58e-15 c.107.1.1 114826 1c7nA 399 1.858 c.67.1.3 34413 2o0rA 411 2.560 1d2fA 390 2.674 c.67.1.3 34411 1q0rA 298 3.106 c.69.1.28 95508 1pieA 419 3.952 d.14.1.5,d.58.26.7 94706,94707 2z61A 370 4.262 1gy8A 397 4.906 c.2.1.2 83376 1rrmA 386 5.035 e.22.1.2 105081 1sc6A 404 5.722 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o1sA 621 6.025 1gdeA 389 6.742 c.67.1.1 60456 1ars 396 7.037 2cstA 411 7.247 c.67.1.1 34273 1yaaA 412 7.466 c.67.1.1 34280 1m7yA 435 7.606 c.67.1.4 78761 1yqgA 263 7.701 1m3sA 186 7.775 c.80.1.3 78573 3brsA 289 8.986 1vimA 200 9.125 c.80.1.3 100758 2z20A 432 10.29 1xi9A 406 11.49 c.67.1.1 115355 1jftA 340 12.00 a.35.1.5,c.93.1.1 66652,66653 1ynuA 473 12.01 c.67.1.4 123762 1j4aA 333 12.29 c.2.1.4,c.23.12.1 71502,71503 1u08A 386 12.39 c.67.1.1 107543 1j32A 388 13.08 c.67.1.1 77067 2pocA 367 13.62 2p1zA 180 14.37 1w7lA 422 14.80 c.67.1.1 109226 2px6A 316 14.89 1wstA 417 15.15 c.67.1.1 121244 1jeoA 180 15.36 c.80.1.3 66611 1v2dA 381 15.58 c.67.1.1 108281 1bykA 255 16.04 c.93.1.1 35706 1bw0A 416 17.13 c.67.1.1 34385 2gekA 406 17.17 2cz9A 350 18.23 2z1yA 397 18.40 2rgyA 290 19.43 3cwqA 209 20.27 1ek6A 348 20.88 c.2.1.2 29800 2gb3A 409 21.35 c.67.1.1 134903 2bkwA 385 21.55 c.67.1.3 128714 1v4vA 376 21.89 c.87.1.3 100313 1dxy 333 23.40 1azwA 313 23.55 c.69.1.7 34658 2csuA 457 23.67 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cb0A 333 23.69 1i36A 264 23.78 a.100.1.8,c.2.1.6 71108,71109 1js3A 486 24.74 c.67.1.6 67215 1uu1A 335 24.91 c.67.1.1 99993 3bf7A 255 25.25 1wxiA 275 25.45 c.26.2.1 121400 2cduA 452 25.76 2dejA 350 26.71 2h78A 302 26.94 2zg5A 397 27.99 1ajsA 412 28.24 c.67.1.1 34276 1uwcA 261 28.39 c.69.1.17 100101 2driA 271 28.40 c.93.1.1 35637 1f0kA 364 28.44 c.87.1.2 35465 1eg5A 384 28.46 c.67.1.3 34429 2ay1A 394 28.54 c.67.1.1 34357 3c6qA 311 28.59 2ez2A 456 28.65 2ioyA 283 29.37 2rjoA 332 29.71 2hy7A 406 30.84 2dtvA 397 30.89 2og1A 286 31.14 2fn9A 290 31.30 1nriA 306 31.49 c.80.1.3 86123 1wvgA 359 31.87 c.2.1.2 121339 1nhsA 447 32.09 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2dwcA 433 32.26 2d59A 144 32.85 c.2.1.8 131266 1pjaA 302 36.97 c.69.1.13 94758 3b9oA 440 37.00 2oq2A 261 37.05 1jkmA 358 37.53 c.69.1.2 34633 1w85B 324 37.71 c.36.1.7,c.48.1.2 114336,114337 1m6yA 301 38.81 a.60.13.1,c.66.1.23 78716,78717 3d02A 303 38.96 1rzuA 485 39.09 c.87.1.8 105140 2i2wA 212 39.44 1ivnA 190 39.57 c.23.10.5 83719 2bfdA 400 40.63 2r2nA 425 41.87 3beoA 375 41.89 2iyfA 430 41.93 1rkxA 357 42.17 c.2.1.2 97631 2fepA 289 42.87 1o4sA 389 43.18 c.67.1.1 86620 1u2eA 289 43.30 2qruA 274 43.56 3bblA 287 43.90 1womA 271 43.90 1m32A 366 44.31 c.67.1.3 78508 2dr1A 386 45.27 1oj7A 408 45.35 e.22.1.2 103971 1wm1A 317 45.54 c.69.1.7 109405 2pg3A 232 45.61 1u4nA 310 45.99 c.69.1.2 113021 2qvcA 313 46.02 2fssA 365 46.84 1zoiA 276 46.93 2jejA 358 48.69 d.240.1.1,e.8.1.7 138284,138285 1qj4A 257 49.18 c.69.1.20 34796 1va4A 279 49.23 c.69.1.12 108458 1iukA 140 49.58 c.2.1.8 83712 1wuuA 399 49.90 d.14.1.5,d.58.26.7 114900,114901 2df8A 325 50.49 1bn7A 294 51.17 c.69.1.8 34677 1yizA 429 53.20 c.67.1.1 123375 1t70A 255 54.51 d.159.1.9 112275 1pmmA 466 54.64 c.67.1.6 94901 2ahrA 259 55.27 a.100.1.10,c.2.1.6 126775,126776 2e7jA 371 56.14 1r1dA 247 56.36 c.69.1.29 96813 2iksA 293 58.01 1qgoA 264 58.84 c.92.1.2 35596 1zq9A 285 58.91 c.66.1.24 125505 1xdwA 331 59.51 1y37A 304 60.66 2b69A 343 60.89 c.2.1.2 127974 1umdA 367 61.24 c.36.1.11 99599 1x7yA 400 62.93 c.36.1.11 114944 1oc2A 348 63.26 c.2.1.2 92765 1v72A 356 63.46 c.67.1.1 119860 2pv7A 298 64.78 1kmkA 406 65.11 c.67.1.3 68696 1ni5A 433 65.17 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2q28A 564 65.25 1zunA 325 66.33 c.26.2.2 125676 2j6iA 364 67.78 2h3hA 313 68.54 3canA 182 69.07 1mj5A 302 70.04 c.69.1.8 91285 2q71A 356 70.41 1jmkC 230 71.57 c.69.1.22 71747 1tk9A 188 72.01 c.80.1.3 107082 3brqA 296 72.54 1wyzA 242 72.81 c.90.1.1 121471 2pbfA 227 72.85 1potA 325 75.10 c.94.1.1 35807 1eq2A 310 75.86 c.2.1.2 29814 2douA 376 76.81 2iuyA 342 77.88 1zejA 293 78.00 1uk8A 282 78.33 c.69.1.10 107907 1ys7A 233 79.06 a.4.6.1,c.23.1.1 123961,123962 2qm8A 337 79.51 8abpA 306 82.48 c.93.1.1 35647 3b34A 891 82.56 1vefA 395 82.72 c.67.1.4 120018 2hoxA 427 82.89 c.67.1.1 136644 1surA 215 82.91 c.26.2.2 31620 1jf9A 408 84.00 c.67.1.3 62931 2e18A 257 84.66 2h0aA 276 85.35 1w0mA 226 87.14 c.1.1.1 109027 1svvA 359 89.00 c.67.1.1 106054 2z9wA 392 89.33 1xklA 273 89.83 c.69.1.20 115410