# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.69e-24 c.107.1.2 71342 1k20A 310 5.31e-24 c.107.1.1 68027 2eb0A 307 7.88e-22 2qb7A 397 3.44e-18 1wpnA 188 4.00e-15 c.107.1.1 114826 1c7nA 399 1.263 c.67.1.3 34413 1d2fA 390 1.531 c.67.1.3 34411 2o0rA 411 2.352 1m7yA 435 3.416 c.67.1.4 78761 1pieA 419 4.607 d.14.1.5,d.58.26.7 94706,94707 1sc6A 404 4.634 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1gdeA 389 5.514 c.67.1.1 60456 1q0rA 298 5.955 c.69.1.28 95508 2z61A 370 6.919 1gy8A 397 7.533 c.2.1.2 83376 2pocA 367 7.543 3brsA 289 7.787 1xi9A 406 7.809 c.67.1.1 115355 1ynuA 473 7.895 c.67.1.4 123762 1u08A 386 7.945 c.67.1.1 107543 1j4aA 333 8.093 c.2.1.4,c.23.12.1 71502,71503 1bw0A 416 8.665 c.67.1.1 34385 1ars 396 8.919 1wstA 417 8.929 c.67.1.1 121244 1rrmA 386 9.155 e.22.1.2 105081 2z20A 432 9.219 1jftA 340 9.242 a.35.1.5,c.93.1.1 66652,66653 1js3A 486 10.00 c.67.1.6 67215 3c4vA 426 10.74 1yaaA 412 10.95 c.67.1.1 34280 2o1sA 621 11.35 2zg5A 397 11.74 1jeoA 180 11.94 c.80.1.3 66611 1oj7A 408 11.96 e.22.1.2 103971 1j32A 388 12.98 c.67.1.1 77067 2cstA 411 13.25 c.67.1.1 34273 1v2dA 381 13.28 c.67.1.1 108281 2rgyA 290 13.81 2dtvA 397 14.27 2cz9A 350 15.82 2z1yA 397 15.93 2gb3A 409 16.47 c.67.1.1 134903 2cb0A 333 16.60 1m6yA 301 16.66 a.60.13.1,c.66.1.23 78716,78717 2p1zA 180 17.02 1i36A 264 17.81 a.100.1.8,c.2.1.6 71108,71109 1uwcA 261 18.58 c.69.1.17 100101 1yqgA 263 19.92 1eg5A 384 20.32 c.67.1.3 34429 2bkwA 385 20.41 c.67.1.3 128714 1t70A 255 21.27 d.159.1.9 112275 1m3sA 186 21.28 c.80.1.3 78573 2px6A 316 21.70 2dr1A 386 22.18 1ek6A 348 22.27 c.2.1.2 29800 2gekA 406 23.05 2bfdA 400 23.29 1bykA 255 23.72 c.93.1.1 35706 2h78A 302 24.20 2ioyA 283 25.12 2driA 271 25.48 c.93.1.1 35637 2qvcA 313 26.02 1dxy 333 26.66 1iukA 140 26.79 c.2.1.8 83712 1uu1A 335 26.82 c.67.1.1 99993 3cwqA 209 27.42 2ez2A 456 27.87 3bf7A 255 28.40 3d02A 303 28.61 1v72A 356 28.68 c.67.1.1 119860 1ajsA 412 29.20 c.67.1.1 34276 3c6qA 311 29.59 2d59A 144 30.20 c.2.1.8 131266 2r2nA 425 30.92 2oq2A 261 31.30 2dejA 350 31.76 1nriA 306 32.17 c.80.1.3 86123 1tibA 269 32.64 c.69.1.17 34738 2pbfA 227 33.08 2fn9A 290 33.33 2fssA 365 34.23 1x7yA 400 34.32 c.36.1.11 114944 1vimA 200 34.43 c.80.1.3 100758 1u2eA 289 35.94 2pv7A 298 36.12 1m32A 366 37.12 c.67.1.3 78508 2og1A 286 37.98 3bblA 287 38.07 1ys7A 233 38.32 a.4.6.1,c.23.1.1 123961,123962 2iksA 293 38.62 1vjoA 393 38.78 c.67.1.3 100827 2fepA 289 40.36 1w7lA 422 42.07 c.67.1.1 109226 1wm1A 317 42.29 c.69.1.7 109405 1o4sA 389 42.47 c.67.1.1 86620 1rzuA 485 42.70 c.87.1.8 105140 2iyfA 430 42.89 1azwA 313 44.23 c.69.1.7 34658 1wxiA 275 44.41 c.26.2.1 121400 1kmkA 406 45.21 c.67.1.3 68696 3clkA 290 45.34 1vefA 395 45.72 c.67.1.4 120018 2csuA 457 45.87 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2e7jA 371 46.13 2douA 376 47.10 2i2wA 212 47.24 1zunA 325 47.57 c.26.2.2 125676 2j6iA 364 49.17 2ay1A 394 49.38 c.67.1.1 34357 1u4nA 310 51.69 c.69.1.2 113021 1wuuA 399 52.54 d.14.1.5,d.58.26.7 114900,114901 1wolA 122 53.40 2df8A 325 53.87 2rjoA 332 54.15 1r3dA 264 54.39 c.69.1.35 111680 2cduA 452 55.02 1potA 325 55.12 c.94.1.1 35807 2hy7A 406 55.57 2jejA 358 55.97 d.240.1.1,e.8.1.7 138284,138285 1iirA 415 57.43 c.87.1.5 62453 3b46A 447 57.45 1y37A 304 58.59 1f0kA 364 59.49 c.87.1.2 35465 1vdmA 153 59.51 c.61.1.1 119994 1mj5A 302 59.76 c.69.1.8 91285 1wvgA 359 60.91 c.2.1.2 121339 2dwcA 433 61.43 1v4vA 376 63.32 c.87.1.3 100313 1umdA 367 63.98 c.36.1.11 99599 2hoxA 427 64.19 c.67.1.1 136644 3beoA 375 65.13 2oatA 439 65.19 c.67.1.4 34452 1jkmA 358 65.44 c.69.1.2 34633 1womA 271 65.98 1t8tA 271 66.16 c.37.1.5 106685 1qgoA 264 66.67 c.92.1.2 35596 1va4A 279 67.22 c.69.1.12 108458 2q28A 564 67.77 2h0aA 276 68.39 2q71A 356 68.41 3b9oA 440 68.43 2h3hA 313 68.95 1pmmA 466 69.06 c.67.1.6 94901 1jf9A 408 69.42 c.67.1.3 62931 3tglA 269 69.54 c.69.1.17 34733 1a8qA 274 69.76 c.69.1.12 34702 1tk9A 188 70.60 c.80.1.3 107082 2q0xA 335 71.77 2ivmA 150 72.31 1tib 269 74.81 1r1dA 247 76.01 c.69.1.29 96813 1rkxA 357 76.17 c.2.1.2 97631 1d3gA 367 76.43 c.1.4.1 28600 1uk8A 282 77.47 c.69.1.10 107907 2yrrA 353 79.07 1x9iA 302 79.35 c.80.1.1 114997 1lk9A 448 79.36 c.67.1.1 78057 2dy0A 190 79.78 1yizA 429 79.97 c.67.1.1 123375 2ahrA 259 80.39 a.100.1.10,c.2.1.6 126775,126776 2dri 271 80.83 1xdwA 331 81.88 1qj4A 257 82.78 c.69.1.20 34796 1bn7A 294 85.04 c.69.1.8 34677 1gdhA 320 85.16 c.2.1.4,c.23.12.1 30095,31355 1vljA 407 85.66 e.22.1.2 108832 2yvaA 196 86.45 1lc5A 364 86.61 c.67.1.1 73827 1dxyA 333 87.14 c.2.1.4,c.23.12.1 30094,31354 1moq 368 87.30 1uqtA 482 88.22 c.87.1.6 99794 2h29A 189 88.78 1sur 215 88.91