# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.23e-22 c.107.1.2 71342 1k20A 310 4.24e-22 c.107.1.1 68027 2eb0A 307 8.56e-20 2qb7A 397 5.37e-16 1wpnA 188 1.48e-14 c.107.1.1 114826 1d2fA 390 0.5919 c.67.1.3 34411 1c7nA 399 0.9441 c.67.1.3 34413 1m7yA 435 1.130 c.67.1.4 78761 1xi9A 406 1.170 c.67.1.1 115355 2o0rA 411 1.568 1rrmA 386 2.129 e.22.1.2 105081 1ynuA 473 2.431 c.67.1.4 123762 2z9wA 392 2.820 1yaaA 412 2.991 c.67.1.1 34280 1bw0A 416 3.585 c.67.1.1 34385 1gdeA 389 3.964 c.67.1.1 60456 1pieA 419 4.094 d.14.1.5,d.58.26.7 94706,94707 2gb3A 409 4.676 c.67.1.1 134903 2jejA 358 4.831 d.240.1.1,e.8.1.7 138284,138285 1v2dA 381 5.151 c.67.1.1 108281 2cstA 411 6.512 c.67.1.1 34273 2z61A 370 6.570 1j32A 388 6.593 c.67.1.1 77067 1ars 396 6.654 2z20A 432 7.031 2pocA 367 8.800 1eg5A 384 9.396 c.67.1.3 34429 2o1sA 621 9.509 1zunA 325 11.14 c.26.2.2 125676 1w7lA 422 11.75 c.67.1.1 109226 1gy8A 397 12.19 c.2.1.2 83376 2dtvA 397 12.37 3cwqA 209 13.10 1wstA 417 14.30 c.67.1.1 121244 1u08A 386 14.55 c.67.1.1 107543 2yrrA 353 15.46 2rgyA 290 17.48 2z1yA 397 17.70 2hufA 393 18.33 1j4aA 333 18.79 c.2.1.4,c.23.12.1 71502,71503 2px6A 316 18.97 3brsA 289 19.98 2zg5A 397 20.83 1vjoA 393 21.46 c.67.1.3 100827 1oj7A 408 22.15 e.22.1.2 103971 1js3A 486 24.69 c.67.1.6 67215 1sc6A 404 24.91 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2cz9A 350 24.99 2ez9A 603 26.07 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1o4sA 389 26.38 c.67.1.1 86620 2dr1A 386 26.47 1yqgA 263 27.01 1i36A 264 27.03 a.100.1.8,c.2.1.6 71108,71109 1svvA 359 27.24 c.67.1.1 106054 1wxiA 275 27.39 c.26.2.1 121400 1m6yA 301 27.40 a.60.13.1,c.66.1.23 78716,78717 2cb0A 333 27.61 3c4vA 426 28.56 1kmkA 406 29.93 c.67.1.3 68696 2ez2A 456 29.95 2q28A 564 30.12 2bkwA 385 30.32 c.67.1.3 128714 1f0kA 364 30.39 c.87.1.2 35465 1ajsA 412 30.52 c.67.1.1 34276 1jftA 340 30.67 a.35.1.5,c.93.1.1 66652,66653 1yizA 429 30.94 c.67.1.1 123375 1q0rA 298 31.09 c.69.1.28 95508 1bn7A 294 32.24 c.69.1.8 34677 1vljA 407 32.84 e.22.1.2 108832 2e7jA 371 33.41 2gs8A 317 33.75 2r2nA 425 34.29 2pbfA 227 35.67 2og1A 286 35.85 1bykA 255 36.63 c.93.1.1 35706 1v72A 356 37.44 c.67.1.1 119860 1zq9A 285 39.64 c.66.1.24 125505 2dejA 350 39.85 1zuwA 272 40.47 3caiA 406 41.35 1jkmA 358 41.66 c.69.1.2 34633 2pv7A 298 42.52 1ek6A 348 43.49 c.2.1.2 29800 2bfdA 400 43.80 3b46A 447 44.32 1surA 215 45.82 c.26.2.2 31620 2bwnA 401 46.30 c.67.1.4 129368 1t3iA 420 46.49 c.67.1.3 106354 2ay1A 394 47.88 c.67.1.1 34357 2hoxA 427 48.34 c.67.1.1 136644 1u2eA 289 49.90 1uk8A 282 50.21 c.69.1.10 107907 2gekA 406 50.33 1tibA 269 51.33 c.69.1.17 34738 3bf7A 255 52.22 2c31A 568 52.41 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1m32A 366 54.39 c.67.1.3 78508 1pzxA 289 55.11 c.119.1.1 95484 2iuyA 342 55.24 1dxy 333 56.15 1uu1A 335 58.21 c.67.1.1 99993 1lc5A 364 58.61 c.67.1.1 73827 2driA 271 58.92 c.93.1.1 35637 1b5pA 385 58.92 c.67.1.1 90403 2aeuA 374 59.09 c.67.1.8 126646 1r1dA 247 60.39 c.69.1.29 96813 2fepA 289 61.61 1p3dA 475 61.64 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1xdwA 331 61.79 1wuuA 399 62.22 d.14.1.5,d.58.26.7 114900,114901 1vimA 200 62.45 c.80.1.3 100758 3bblA 287 62.47 1k92A 455 63.24 c.26.2.1,d.210.1.1 68325,68326 2csuA 457 63.75 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1wm1A 317 64.16 c.69.1.7 109405 2qvcA 313 64.39 1potA 325 65.85 c.94.1.1 35807 1ybhA 590 66.11 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1x7yA 400 66.14 c.36.1.11 114944 1jf9A 408 66.26 c.67.1.3 62931 1kvkA 395 66.66 d.14.1.5,d.58.26.3 73060,73061 3b9oA 440 66.75 1va4A 279 66.89 c.69.1.12 108458 3d02A 303 67.31 1u4nA 310 70.04 c.69.1.2 113021 3c6qA 311 70.45 2iksA 293 70.51 1yzyA 413 70.96 c.146.1.1 124292 1iirA 415 71.37 c.87.1.5 62453 1v4vA 376 72.26 c.87.1.3 100313 1yioA 208 72.32 a.4.6.2,c.23.1.1 123326,123327 3beoA 375 73.01 2gzmA 267 73.97 1qj4A 257 74.03 c.69.1.20 34796 2fn9A 290 75.11 2ioyA 283 75.24 2fckA 181 75.81 d.108.1.1 133272 2hfsA 332 76.66 1rzuA 485 79.77 c.87.1.8 105140 2qs7A 144 82.10 2douA 376 82.18 1sur 215 82.79 3canA 182 82.94 2j6iA 364 83.21 2h78A 302 83.36 2fssA 365 83.39 1d3gA 367 84.19 c.1.4.1 28600 1udcA 338 84.37 c.2.1.2 29785 2oq2A 261 84.81 1bd0A 388 85.29 b.49.2.2,c.1.6.1 26480,28642 1qgoA 264 87.30 c.92.1.2 35596 2qm8A 337 88.62 1womA 271 89.08 2pg3A 232 89.21 1pjaA 302 89.83 c.69.1.13 94758