# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 7.44e-25 c.107.1.2 71342 1k20A 310 2.14e-24 c.107.1.1 68027 2eb0A 307 5.72e-22 2qb7A 397 7.99e-19 1wpnA 188 2.58e-15 c.107.1.1 114826 1c7nA 399 1.408 c.67.1.3 34413 2z61A 370 1.801 1d2fA 390 2.029 c.67.1.3 34411 2o0rA 411 2.351 1rrmA 386 2.967 e.22.1.2 105081 2gb3A 409 3.025 c.67.1.1 134903 1w7lA 422 4.078 c.67.1.1 109226 1q0rA 298 4.501 c.69.1.28 95508 1yaaA 412 4.564 c.67.1.1 34280 1gy8A 397 4.773 c.2.1.2 83376 1ars 396 5.078 2o1sA 621 5.417 1xi9A 406 5.950 c.67.1.1 115355 2bkwA 385 6.002 c.67.1.3 128714 1m7yA 435 6.758 c.67.1.4 78761 1wstA 417 6.911 c.67.1.1 121244 1j32A 388 7.014 c.67.1.1 77067 1v2dA 381 7.130 c.67.1.1 108281 2cstA 411 7.146 c.67.1.1 34273 1gdeA 389 7.576 c.67.1.1 60456 2z20A 432 8.304 1ek6A 348 8.492 c.2.1.2 29800 2pocA 367 9.050 1ynuA 473 9.162 c.67.1.4 123762 2dtvA 397 9.589 1wxiA 275 10.24 c.26.2.1 121400 1bn7A 294 10.88 c.69.1.8 34677 2zg5A 397 11.17 2z1yA 397 11.85 1u08A 386 12.19 c.67.1.1 107543 1pieA 419 12.30 d.14.1.5,d.58.26.7 94706,94707 2rgyA 290 13.59 1eg5A 384 14.05 c.67.1.3 34429 1bw0A 416 14.42 c.67.1.1 34385 2px6A 316 15.05 2ay1A 394 15.11 c.67.1.1 34357 2r2nA 425 15.32 2cz9A 350 16.88 1oj7A 408 17.09 e.22.1.2 103971 2jejA 358 17.29 d.240.1.1,e.8.1.7 138284,138285 1yqgA 263 18.36 1o4sA 389 19.22 c.67.1.1 86620 1yizA 429 19.40 c.67.1.1 123375 2dr1A 386 19.64 2douA 376 19.92 1v4vA 376 20.04 c.87.1.3 100313 1jftA 340 20.08 a.35.1.5,c.93.1.1 66652,66653 1womA 271 20.87 2csuA 457 20.87 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2dejA 350 21.19 3brsA 289 21.32 1jeoA 180 23.51 c.80.1.3 66611 2yrrA 353 23.88 1m32A 366 24.55 c.67.1.3 78508 2cb0A 333 24.98 2oq2A 261 25.42 1js3A 486 25.43 c.67.1.6 67215 1azwA 313 25.91 c.69.1.7 34658 3beoA 375 26.38 1j4aA 333 26.68 c.2.1.4,c.23.12.1 71502,71503 1mj5A 302 27.10 c.69.1.8 91285 2ez2A 456 27.63 1m6yA 301 27.68 a.60.13.1,c.66.1.23 78716,78717 2gekA 406 27.89 1w85B 324 28.52 c.36.1.7,c.48.1.2 114336,114337 1zoiA 276 28.70 2bwnA 401 28.99 c.67.1.4 129368 1bykA 255 31.22 c.93.1.1 35706 1v72A 356 31.99 c.67.1.1 119860 3cwqA 209 32.69 1qj4A 257 33.63 c.69.1.20 34796 2iuyA 342 33.67 2h78A 302 33.79 2yvaA 196 33.92 2p1zA 180 34.08 1uu1A 335 34.35 c.67.1.1 99993 1eluA 390 34.50 c.67.1.3 34434 3bblA 287 34.60 1ajsA 412 35.16 c.67.1.1 34276 1eq2A 310 36.07 c.2.1.2 29814 1lc5A 364 36.26 c.67.1.1 73827 1zunA 325 37.59 c.26.2.2 125676 1vimA 200 38.15 c.80.1.3 100758 1sc6A 404 38.28 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1k07A 263 38.62 d.157.1.1 77218 2fn9A 290 39.22 2q71A 356 40.20 1f0kA 364 40.80 c.87.1.2 35465 1pjaA 302 40.96 c.69.1.13 94758 2og1A 286 41.03 1xqwA 293 41.11 1wvgA 359 41.78 c.2.1.2 121339 1svvA 359 42.40 c.67.1.1 106054 1rkxA 357 42.54 c.2.1.2 97631 1m3sA 186 43.03 c.80.1.3 78573 1i36A 264 43.26 a.100.1.8,c.2.1.6 71108,71109 2fepA 289 43.37 2i2wA 212 43.58 2d59A 144 43.77 c.2.1.8 131266 1d3gA 367 45.06 c.1.4.1 28600 1qgoA 264 45.73 c.92.1.2 35596 1uk8A 282 46.01 c.69.1.10 107907 2q28A 564 46.76 2z9wA 392 47.51 1wyzA 242 47.61 c.90.1.1 121471 2e7jA 371 48.90 3bf7A 255 50.97 2ioyA 283 52.00 1wm1A 317 52.94 c.69.1.7 109405 3bwxA 285 54.19 1udcA 338 54.48 c.2.1.2 29785 1vefA 395 54.62 c.67.1.4 120018 1t70A 255 54.93 d.159.1.9 112275 1tk9A 188 55.20 c.80.1.3 107082 2pg3A 232 56.67 3d02A 303 57.22 1wuuA 399 57.68 d.14.1.5,d.58.26.7 114900,114901 1r1dA 247 58.58 c.69.1.29 96813 1rzuA 485 58.95 c.87.1.8 105140 1t3iA 420 59.36 c.67.1.3 106354 1wolA 122 59.77 3caiA 406 60.78 3c6qA 311 62.91 1u4nA 310 64.53 c.69.1.2 113021 1zq9A 285 64.92 c.66.1.24 125505 1u2eA 289 65.15 1umdB 324 66.05 c.36.1.7,c.48.1.2 99600,99601 1kmkA 406 66.31 c.67.1.3 68696 1y37A 304 66.57 2rjoA 332 66.58 2driA 271 68.07 c.93.1.1 35637 2b69A 343 69.53 c.2.1.2 127974 1umdA 367 70.60 c.36.1.11 99599 1vljA 407 70.72 e.22.1.2 108832 2iyfA 430 71.06 3canA 182 72.20 2q0xA 335 74.46 2bfdA 400 75.69 1e6uA 321 77.78 c.2.1.2 29805 1yzyA 413 78.75 c.146.1.1 124292 2c29D 337 78.90 2e5fA 325 79.12 2hufA 393 79.39 3bueA 79 79.57 3b34A 891 79.59 1uc8A 280 80.12 c.30.1.6,d.142.1.7 99165,99166 2qruA 274 80.28 1b5pA 385 81.11 c.67.1.1 90403 1potA 325 81.41 c.94.1.1 35807 8abpA 306 81.66 c.93.1.1 35647 1va4A 279 81.94 c.69.1.12 108458 1r3dA 264 82.29 c.69.1.35 111680 2dwcA 433 83.29 3brqA 296 83.75 2c0rA 362 84.47 c.67.1.4 129604 1mtzA 293 85.35 c.69.1.7 79467 1iukA 140 86.56 c.2.1.8 83712 2fyfA 398 87.91 2qvcA 313 87.96 2cduA 452 89.10 2iksA 293 89.32