# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 3.71e-27 c.107.1.2 71342 1k20A 310 2.29e-25 c.107.1.1 68027 2eb0A 307 3.38e-23 2qb7A 397 1.15e-19 1wpnA 188 3.09e-17 c.107.1.1 114826 2z1yA 397 1.235 2dtvA 397 1.278 2o0rA 411 2.050 1gdeA 389 2.384 c.67.1.1 60456 1v2dA 381 3.049 c.67.1.1 108281 1m7yA 435 3.212 c.67.1.4 78761 1xi9A 406 3.629 c.67.1.1 115355 2zg5A 397 4.159 2z20A 432 4.412 2pocA 367 6.104 3c4vA 426 6.257 1rrmA 386 6.348 e.22.1.2 105081 1d2fA 390 6.367 c.67.1.3 34411 1j32A 388 6.825 c.67.1.1 77067 1js3A 486 7.167 c.67.1.6 67215 1c7nA 399 7.419 c.67.1.3 34413 1u08A 386 8.105 c.67.1.1 107543 3brsA 289 8.231 2cz9A 350 8.547 1bw0A 416 10.15 c.67.1.1 34385 2yrrA 353 10.85 2z61A 370 10.87 1wstA 417 10.97 c.67.1.1 121244 2dejA 350 11.86 1pieA 419 12.27 d.14.1.5,d.58.26.7 94706,94707 1yaaA 412 12.67 c.67.1.1 34280 1ars 396 13.07 2rgyA 290 15.06 1o4sA 389 16.55 c.67.1.1 86620 2ez9A 603 18.72 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2cb0A 333 19.73 1w7lA 422 20.21 c.67.1.1 109226 2dr1A 386 22.45 2gb3A 409 24.77 c.67.1.1 134903 2o1sA 621 25.41 2hufA 393 25.50 1vp4A 425 25.83 c.67.1.1 113935 2bkwA 385 26.59 c.67.1.3 128714 1vjoA 393 27.59 c.67.1.3 100827 1oj7A 408 28.56 e.22.1.2 103971 1m32A 366 29.12 c.67.1.3 78508 2fn9A 290 30.34 1yqgA 263 30.65 2fckA 181 31.35 d.108.1.1 133272 1rrvA 416 32.07 c.87.1.5 105083 1kmkA 406 34.00 c.67.1.3 68696 2cyyA 151 34.32 a.4.5.32,d.58.4.2 131028,131029 2a2cA 478 35.29 1bykA 255 35.69 c.93.1.1 35706 1lc5A 364 36.43 c.67.1.1 73827 1v72A 356 36.53 c.67.1.1 119860 2pgsA 451 37.02 2ay1A 394 38.02 c.67.1.1 34357 2jejA 358 39.80 d.240.1.1,e.8.1.7 138284,138285 3beoA 375 40.25 1rzuA 485 40.47 c.87.1.8 105140 2amlA 373 40.65 2csuA 457 40.72 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1fc4A 401 40.97 c.67.1.4 59760 2i2wA 212 41.29 2ordA 397 41.54 2p1zA 180 42.03 1pmmA 466 42.12 c.67.1.6 94901 2o7rA 338 42.50 2oq2A 261 44.47 3bn1A 373 45.00 2c81A 418 45.57 1ynuA 473 47.77 c.67.1.4 123762 2qvcA 313 47.90 1wxiA 275 48.46 c.26.2.1 121400 1o69A 394 48.64 c.67.1.4 92560 3cloA 258 48.93 1azwA 313 49.57 c.69.1.7 34658 1yzyA 413 51.48 c.146.1.1 124292 2yzhA 171 51.98 1nriA 306 52.37 c.80.1.3 86123 1eg5A 384 53.73 c.67.1.3 34429 2iksA 293 53.85 1wy5A 317 54.90 c.26.2.5,d.229.1.1 121428,121429 1j1nA 492 54.99 c.94.1.1 83978 1yizA 429 55.64 c.67.1.1 123375 2r2nA 425 55.72 1vimA 200 56.62 c.80.1.3 100758 2bg5A 324 56.78 1iirA 415 57.74 c.87.1.5 62453 2ewdA 317 58.43 1t2dA 322 59.12 c.2.1.5,d.162.1.1 99084,99085 3canA 182 59.36 1u5kA 244 60.09 b.40.4.13,g.45.1.2 113038,113039 1kvkA 395 60.52 d.14.1.5,d.58.26.3 73060,73061 2dt8A 280 60.52 2iw1A 374 61.04 c.87.1.8 137738 1jeoA 180 61.61 c.80.1.3 66611 1vdmA 153 62.37 c.61.1.1 119994 2iyfA 430 63.24 1x9iA 302 65.27 c.80.1.1 114997 2dqbA 376 65.95 1f0kA 364 67.12 c.87.1.2 35465 3d02A 303 67.80 2o3jA 481 68.16 1vljA 407 68.83 e.22.1.2 108832 2fepA 289 69.95 1vmeA 410 70.22 c.23.5.1,d.157.1.3 108893,108894 1vj7A 393 71.13 a.211.1.1,d.218.1.8 100801,100802 1xhcA 367 71.69 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2gzsA 278 72.52 2r8oA 669 73.50 3c6qA 311 73.81 1tibA 269 73.90 c.69.1.17 34738 1o2dA 371 74.44 e.22.1.2 86591 1moqA 368 74.61 c.80.1.1 35302 2ogeA 399 74.83 1wuuA 399 75.12 d.14.1.5,d.58.26.7 114900,114901 1uc8A 280 75.83 c.30.1.6,d.142.1.7 99165,99166 2yvaA 196 76.00 1xrjA 261 76.07 c.37.1.6 122256 2cstA 411 76.70 c.67.1.1 34273 2douA 376 76.73 1v4vA 376 76.88 c.87.1.3 100313 8abp 306 77.98 2p6pA 384 78.11 2ipxA 233 80.78 2qz8A 149 80.92 1uu1A 335 83.85 c.67.1.1 99993 2driA 271 86.14 c.93.1.1 35637 2gekA 406 86.27 2fncA 381 86.49 1lldA 319 86.65 c.2.1.5,d.162.1.1 30177,42144 2e7jA 371 87.01 1xngA 268 87.37 c.26.2.1 122186 1mv8A 436 87.96 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2iyaA 424 88.61