# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.52e-29 c.107.1.2 71342 1k20A 310 6.39e-29 c.107.1.1 68027 2eb0A 307 3.06e-26 2qb7A 397 1.08e-21 1wpnA 188 3.14e-18 c.107.1.1 114826 1c7nA 399 1.915 c.67.1.3 34413 1pieA 419 2.263 d.14.1.5,d.58.26.7 94706,94707 2o0rA 411 2.309 1rrmA 386 2.388 e.22.1.2 105081 2gb3A 409 3.549 c.67.1.1 134903 2o1sA 621 3.629 1yaaA 412 3.828 c.67.1.1 34280 2z61A 370 4.307 1q0rA 298 4.876 c.69.1.28 95508 2jejA 358 5.223 d.240.1.1,e.8.1.7 138284,138285 1wstA 417 5.228 c.67.1.1 121244 1d2fA 390 5.447 c.67.1.3 34411 3brsA 289 5.628 1wxiA 275 7.809 c.26.2.1 121400 2z1yA 397 8.088 1gdeA 389 8.198 c.67.1.1 60456 2z20A 432 8.880 1bw0A 416 8.931 c.67.1.1 34385 1xi9A 406 8.994 c.67.1.1 115355 2cb0A 333 9.598 1ars 396 10.21 2cstA 411 10.49 c.67.1.1 34273 1m7yA 435 10.49 c.67.1.4 78761 1gy8A 397 11.45 c.2.1.2 83376 1j4aA 333 12.22 c.2.1.4,c.23.12.1 71502,71503 2bkwA 385 12.50 c.67.1.3 128714 3cwqA 209 13.08 2pocA 367 13.09 1w7lA 422 13.15 c.67.1.1 109226 2csuA 457 14.66 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1js3A 486 14.68 c.67.1.6 67215 1vimA 200 15.21 c.80.1.3 100758 2zg5A 397 15.37 2dtvA 397 15.38 1u08A 386 15.51 c.67.1.1 107543 1i36A 264 16.02 a.100.1.8,c.2.1.6 71108,71109 1sc6A 404 16.05 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1f0kA 364 16.46 c.87.1.2 35465 2rgyA 290 18.18 1azwA 313 18.46 c.69.1.7 34658 1v2dA 381 19.06 c.67.1.1 108281 2df8A 325 19.26 1j32A 388 20.31 c.67.1.1 77067 1jftA 340 21.06 a.35.1.5,c.93.1.1 66652,66653 2p1zA 180 21.17 1jkmA 358 22.02 c.69.1.2 34633 1r1dA 247 24.70 c.69.1.29 96813 2cz9A 350 25.04 1uu1A 335 25.65 c.67.1.1 99993 1ynuA 473 25.95 c.67.1.4 123762 1qj4A 257 26.06 c.69.1.20 34796 2hy7A 406 26.26 2dejA 350 26.58 1wuuA 399 26.86 d.14.1.5,d.58.26.7 114900,114901 1jeoA 180 27.30 c.80.1.3 66611 1vljA 407 27.75 e.22.1.2 108832 3c6qA 311 28.41 2dr1A 386 29.28 1yizA 429 29.36 c.67.1.1 123375 1m3sA 186 29.45 c.80.1.3 78573 1yqgA 263 30.94 1uk8A 282 31.41 c.69.1.10 107907 3bf7A 255 31.50 2rjoA 332 31.75 1zq9A 285 31.93 c.66.1.24 125505 2q71A 356 32.35 1rzuA 485 33.47 c.87.1.8 105140 1bykA 255 33.56 c.93.1.1 35706 1surA 215 33.84 c.26.2.2 31620 2r2nA 425 34.13 1jbwA 428 34.26 c.59.1.2,c.72.2.2 62860,62861 2ez9A 603 34.46 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 3d02A 303 34.70 1ys7A 233 35.37 a.4.6.1,c.23.1.1 123961,123962 1vefA 395 35.71 c.67.1.4 120018 2ay1A 394 36.04 c.67.1.1 34357 1jmkC 230 36.30 c.69.1.22 71747 2bfdA 400 36.71 2dplA 308 37.97 2z9wA 392 39.01 2ez2A 456 39.37 1eg5A 384 39.98 c.67.1.3 34429 2e7jA 371 40.79 2cduA 452 40.80 2f4nA 273 41.42 2px6A 316 41.67 1zpdA 568 42.59 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1d3gA 367 43.88 c.1.4.1 28600 2gekA 406 44.01 1u4nA 310 44.30 c.69.1.2 113021 2qm8A 337 44.48 2oq2A 261 44.69 1bn7A 294 45.82 c.69.1.8 34677 2og1A 286 46.00 2douA 376 46.36 3bueA 79 46.74 1eluA 390 47.44 c.67.1.3 34434 2yvaA 196 48.08 1m6yA 301 48.17 a.60.13.1,c.66.1.23 78716,78717 1womA 271 48.63 2yrrA 353 49.17 1xdwA 331 49.50 2q0oA 236 49.56 2driA 271 53.89 c.93.1.1 35637 3b34A 891 55.01 2ioyA 283 55.14 2dwcA 433 55.16 1nhsA 447 55.40 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2i2wA 212 55.55 2iyfA 430 56.31 1m32A 366 56.83 c.67.1.3 78508 2d59A 144 58.22 c.2.1.8 131266 1tibA 269 60.00 c.69.1.17 34738 2zfzA 79 60.94 1tk9A 188 61.84 c.80.1.3 107082 2iksA 293 62.00 1potA 325 62.47 c.94.1.1 35807 1v4vA 376 63.33 c.87.1.3 100313 1oj7A 408 63.65 e.22.1.2 103971 1jq5A 370 64.35 e.22.1.2 67084 1ajsA 412 64.96 c.67.1.1 34276 3beoA 375 65.00 1x7yA 400 66.74 c.36.1.11 114944 1o4sA 389 66.78 c.67.1.1 86620 1nriA 306 66.80 c.80.1.3 86123 3bblA 287 67.63 1iukA 140 68.56 c.2.1.8 83712 2pv7A 298 68.57 3b9oA 440 68.61 1pswA 348 69.46 c.87.1.7 88287 2fn9A 290 69.48 1zunA 325 69.78 c.26.2.2 125676 2q28A 564 69.81 1ivnA 190 69.91 c.23.10.5 83719 1qgoA 264 72.16 c.92.1.2 35596 1ek6A 348 73.18 c.2.1.2 29800 2e18A 257 73.47 1wm1A 317 74.24 c.69.1.7 109405 1w85B 324 74.52 c.36.1.7,c.48.1.2 114336,114337 1pjaA 302 75.94 c.69.1.13 94758 2g7zA 282 77.22 3canA 182 78.20 1uc8A 280 78.77 c.30.1.6,d.142.1.7 99165,99166 1uwcA 261 79.77 c.69.1.17 100101 1wvgA 359 79.87 c.2.1.2 121339 1t70A 255 80.09 d.159.1.9 112275 1q6zA 528 80.20 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2fssA 365 80.59 1vpvA 300 80.90 c.119.1.1 113975 3bwxA 285 81.50 2f7bA 233 81.65 2e5fA 325 81.80 2fepA 289 82.27 1wyzA 242 87.89 c.90.1.1 121471 1kvkA 395 88.50 d.14.1.5,d.58.26.3 73060,73061