# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.75e-26 c.107.1.2 71342 1k20A 310 7.02e-26 c.107.1.1 68027 2eb0A 307 1.65e-23 2qb7A 397 1.03e-19 1wpnA 188 1.55e-16 c.107.1.1 114826 1c7nA 399 1.889 c.67.1.3 34413 2gb3A 409 2.734 c.67.1.1 134903 2z61A 370 2.903 1wstA 417 2.992 c.67.1.1 121244 2o1sA 621 3.059 1rrmA 386 3.493 e.22.1.2 105081 2o0rA 411 3.636 1pieA 419 3.944 d.14.1.5,d.58.26.7 94706,94707 1yaaA 412 4.522 c.67.1.1 34280 2z1yA 397 4.969 1m7yA 435 5.176 c.67.1.4 78761 2z20A 432 5.729 1gdeA 389 5.749 c.67.1.1 60456 1d2fA 390 5.942 c.67.1.3 34411 1xi9A 406 6.592 c.67.1.1 115355 1gy8A 397 7.027 c.2.1.2 83376 3brsA 289 7.228 1j4aA 333 7.740 c.2.1.4,c.23.12.1 71502,71503 2zg5A 397 7.866 1bw0A 416 8.452 c.67.1.1 34385 2cb0A 333 8.589 1q0rA 298 8.881 c.69.1.28 95508 2jejA 358 9.068 d.240.1.1,e.8.1.7 138284,138285 1js3A 486 9.398 c.67.1.6 67215 2bkwA 385 9.557 c.67.1.3 128714 1ars 396 9.753 2dtvA 397 10.17 2cstA 411 10.51 c.67.1.1 34273 1vimA 200 10.84 c.80.1.3 100758 1j32A 388 11.11 c.67.1.1 77067 1w7lA 422 11.46 c.67.1.1 109226 1wxiA 275 12.69 c.26.2.1 121400 3cwqA 209 13.68 1i36A 264 13.76 a.100.1.8,c.2.1.6 71108,71109 2pocA 367 14.83 1u08A 386 15.03 c.67.1.1 107543 1sc6A 404 16.47 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1r1dA 247 16.50 c.69.1.29 96813 1jeoA 180 16.81 c.80.1.3 66611 1v2dA 381 17.65 c.67.1.1 108281 2rgyA 290 17.81 1jftA 340 17.95 a.35.1.5,c.93.1.1 66652,66653 1f0kA 364 19.00 c.87.1.2 35465 2hy7A 406 19.11 1ynuA 473 19.94 c.67.1.4 123762 2csuA 457 19.97 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1m3sA 186 20.17 c.80.1.3 78573 2r2nA 425 20.58 2p1zA 180 20.79 2bfdA 400 20.93 2q71A 356 21.12 1yqgA 263 23.77 1azwA 313 24.82 c.69.1.7 34658 2gekA 406 25.72 3bf7A 255 25.95 1jbwA 428 26.65 c.59.1.2,c.72.2.2 62860,62861 2df8A 325 27.58 1yizA 429 28.97 c.67.1.1 123375 3c6qA 311 29.25 2px6A 316 29.75 2e7jA 371 30.44 2ez9A 603 30.91 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2cz9A 350 31.12 1oj7A 408 31.58 e.22.1.2 103971 1uu1A 335 31.65 c.67.1.1 99993 1m6yA 301 31.67 a.60.13.1,c.66.1.23 78716,78717 2dejA 350 31.94 3d02A 303 32.34 1wuuA 399 34.05 d.14.1.5,d.58.26.7 114900,114901 1bn7A 294 34.32 c.69.1.8 34677 1w85B 324 34.47 c.36.1.7,c.48.1.2 114336,114337 2dr1A 386 34.76 2ez2A 456 35.22 1uk8A 282 35.74 c.69.1.10 107907 2douA 376 36.43 1jmkC 230 37.54 c.69.1.22 71747 1o4sA 389 37.61 c.67.1.1 86620 2rjoA 332 37.98 1ajsA 412 38.35 c.67.1.1 34276 1x7yA 400 39.26 c.36.1.11 114944 2cduA 452 39.49 2pv7A 298 39.77 2ay1A 394 39.99 c.67.1.1 34357 1vljA 407 40.84 e.22.1.2 108832 1d3gA 367 40.96 c.1.4.1 28600 2driA 271 41.73 c.93.1.1 35637 1bykA 255 42.36 c.93.1.1 35706 2d59A 144 43.12 c.2.1.8 131266 1eluA 390 43.88 c.67.1.3 34434 1xdwA 331 43.93 1tibA 269 44.29 c.69.1.17 34738 1eg5A 384 44.44 c.67.1.3 34429 1surA 215 44.51 c.26.2.2 31620 1qj4A 257 44.64 c.69.1.20 34796 2q28A 564 44.77 1zpdA 568 45.03 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2og1A 286 45.52 1vefA 395 45.65 c.67.1.4 120018 1zq9A 285 46.22 c.66.1.24 125505 1womA 271 46.27 2ioyA 283 46.38 3bblA 287 46.38 1m32A 366 46.53 c.67.1.3 78508 3b34A 891 46.87 1iukA 140 46.90 c.2.1.8 83712 1rzuA 485 47.69 c.87.1.8 105140 1ek6A 348 47.82 c.2.1.2 29800 1wyzA 242 48.53 c.90.1.1 121471 2dplA 308 48.77 1dxy 333 49.83 1nhsA 447 50.52 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ys7A 233 50.57 a.4.6.1,c.23.1.1 123961,123962 2dwcA 433 50.95 1u4nA 310 51.90 c.69.1.2 113021 1jkmA 358 53.54 c.69.1.2 34633 2yvaA 196 56.48 1lk9A 448 56.79 c.67.1.1 78057 2iyfA 430 58.63 2jg2A 422 60.83 1tk9A 188 61.35 c.80.1.3 107082 2yrrA 353 61.80 1uwcA 261 64.05 c.69.1.17 100101 2i2wA 212 64.37 2iksA 293 64.76 1p5zB 263 67.03 c.37.1.1 87815 1uc8A 280 67.68 c.30.1.6,d.142.1.7 99165,99166 2fepA 289 70.25 3beoA 375 70.68 1p3dA 475 70.76 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2q0oA 236 71.65 3bueA 79 73.66 1lc5A 364 73.83 c.67.1.1 73827 2z9wA 392 74.22 1wolA 122 76.28 2f7bA 233 78.25 2qm8A 337 78.25 2fn9A 290 78.83 2r85A 334 80.10 2h78A 302 80.32 1jq5A 370 81.19 e.22.1.2 67084 1nriA 306 81.41 c.80.1.3 86123 1ivnA 190 82.08 c.23.10.5 83719 1ybhA 590 82.64 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2zfzA 79 83.43 2qvcA 313 84.13 2e18A 257 84.64 2e5fA 325 85.34 2fssA 365 86.52 1gdhA 320 87.19 c.2.1.4,c.23.12.1 30095,31355 1eq2A 310 87.63 c.2.1.2 29814 2h1vA 310 88.90 1qgoA 264 88.91 c.92.1.2 35596 1wm1A 317 89.92 c.69.1.7 109405 2f4nA 273 89.99