# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.97e-25 c.107.1.2 71342 1k20A 310 3.32e-25 c.107.1.1 68027 2eb0A 307 1.38e-22 2qb7A 397 2.88e-19 1wpnA 188 1.94e-15 c.107.1.1 114826 1c7nA 399 1.848 c.67.1.3 34413 2o0rA 411 1.917 1d2fA 390 1.952 c.67.1.3 34411 1pieA 419 2.038 d.14.1.5,d.58.26.7 94706,94707 2z61A 370 2.681 1yaaA 412 3.048 c.67.1.1 34280 1gy8A 397 4.388 c.2.1.2 83376 1ynuA 473 4.492 c.67.1.4 123762 1bw0A 416 5.137 c.67.1.1 34385 2jejA 358 5.183 d.240.1.1,e.8.1.7 138284,138285 1wstA 417 5.436 c.67.1.1 121244 2px6A 316 6.067 1m7yA 435 6.667 c.67.1.4 78761 1u08A 386 6.980 c.67.1.1 107543 1gdeA 389 7.331 c.67.1.1 60456 1xi9A 406 7.455 c.67.1.1 115355 1j32A 388 7.863 c.67.1.1 77067 2z1yA 397 8.325 1rrmA 386 8.927 e.22.1.2 105081 2dtvA 397 9.208 1sc6A 404 9.747 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1pjaA 302 10.10 c.69.1.13 94758 2zg5A 397 10.14 2r2nA 425 10.47 1w7lA 422 10.62 c.67.1.1 109226 1oj7A 408 10.64 e.22.1.2 103971 2gb3A 409 10.65 c.67.1.1 134903 1ars 396 12.16 1js3A 486 12.69 c.67.1.6 67215 2bkwA 385 12.77 c.67.1.3 128714 2z20A 432 14.54 2ez2A 456 14.86 1v72A 356 16.00 c.67.1.1 119860 2o1sA 621 16.15 1q0rA 298 17.06 c.69.1.28 95508 1v2dA 381 17.17 c.67.1.1 108281 3bf7A 255 17.36 1eg5A 384 18.23 c.67.1.3 34429 1jkmA 358 18.36 c.69.1.2 34633 2oq2A 261 18.80 2cstA 411 19.04 c.67.1.1 34273 2e7jA 371 19.96 1azwA 313 20.90 c.69.1.7 34658 2cz9A 350 24.00 2pocA 367 24.14 1vefA 395 26.55 c.67.1.4 120018 1m32A 366 26.64 c.67.1.3 78508 3cwqA 209 26.97 2dr1A 386 28.89 1j4aA 333 29.14 c.2.1.4,c.23.12.1 71502,71503 3brsA 289 29.38 2oatA 439 30.26 c.67.1.4 34452 1svvA 359 31.40 c.67.1.1 106054 1jftA 340 31.89 a.35.1.5,c.93.1.1 66652,66653 1bn7A 294 32.06 c.69.1.8 34677 2douA 376 33.23 1wuuA 399 34.08 d.14.1.5,d.58.26.7 114900,114901 1uu1A 335 34.26 c.67.1.1 99993 2hoxA 427 34.40 c.67.1.1 136644 1ek6A 348 35.19 c.2.1.2 29800 1yqgA 263 35.56 1lk9A 448 35.74 c.67.1.1 78057 1o4sA 389 36.35 c.67.1.1 86620 1va4A 279 36.43 c.69.1.12 108458 2cb0A 333 36.60 1i36A 264 37.16 a.100.1.8,c.2.1.6 71108,71109 2rgyA 290 37.66 1y37A 304 38.18 2bwnA 401 38.50 c.67.1.4 129368 1m6yA 301 39.00 a.60.13.1,c.66.1.23 78716,78717 1eluA 390 39.99 c.67.1.3 34434 1jf9A 408 40.26 c.67.1.3 62931 2p1zA 180 41.61 1potA 325 42.09 c.94.1.1 35807 1mj5A 302 42.30 c.69.1.8 91285 2q71A 356 42.73 2csuA 457 43.14 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3beoA 375 43.93 1r1dA 247 44.56 c.69.1.29 96813 1wyzA 242 45.46 c.90.1.1 121471 1wxiA 275 45.77 c.26.2.1 121400 1w85B 324 46.02 c.36.1.7,c.48.1.2 114336,114337 2dkjA 407 46.15 1a8qA 274 46.26 c.69.1.12 34702 1u4nA 310 46.35 c.69.1.2 113021 1vljA 407 46.99 e.22.1.2 108832 1yizA 429 48.52 c.67.1.1 123375 1zoiA 276 49.65 1f0kA 364 49.92 c.87.1.2 35465 1pmmA 466 50.39 c.67.1.6 94901 1jihA 531 50.46 d.240.1.1,e.8.1.7 90374,90375 2e9xC 219 50.84 3c4vA 426 51.83 1xklA 273 52.23 c.69.1.20 115410 1jmkC 230 52.97 c.69.1.22 71747 1t8tA 271 55.02 c.37.1.5 106685 1surA 215 55.66 c.26.2.2 31620 2f4nA 273 56.08 2hy7A 406 56.78 3b46A 447 56.82 2ay1A 394 57.23 c.67.1.1 34357 2og1A 286 57.79 1t3iA 420 58.19 c.67.1.3 106354 1wvgA 359 58.56 c.2.1.2 121339 2q0oA 236 59.10 1bykA 255 59.11 c.93.1.1 35706 2c0rA 362 60.30 c.67.1.4 129604 1k92A 455 60.92 c.26.2.1,d.210.1.1 68325,68326 1womA 271 61.81 1x3mA 415 61.91 c.55.1.2,c.55.1.2 121664,121665 1fc4A 401 62.07 c.67.1.4 59760 1vimA 200 64.87 c.80.1.3 100758 2gmsA 390 65.32 1jeoA 180 65.33 c.80.1.3 66611 2oqxA 467 65.81 1wm1A 317 69.07 c.69.1.7 109405 1lc5A 364 69.98 c.67.1.1 73827 2driA 271 72.23 c.93.1.1 35637 2dejA 350 72.36 2hfsA 332 72.40 2az4A 429 72.46 d.157.1.10 127597 1zq9A 285 77.14 c.66.1.24 125505 1wolA 122 77.39 2fn9A 290 77.60 2qruA 274 77.88 3b34A 891 79.40 1fg7A 356 79.63 c.67.1.1 59819 1rkxA 357 80.79 c.2.1.2 97631 1m6sA 347 80.88 c.67.1.1 78701 1rzuA 485 81.20 c.87.1.8 105140 2po3A 424 81.76 2o7cA 398 83.66 1a8sA 273 84.40 c.69.1.12 34710 2okjA 504 85.41 1k07A 263 85.43 d.157.1.1 77218 1iukA 140 85.73 c.2.1.8 83712 2f7bA 233 85.98 1b6gA 310 86.63 c.69.1.8 34661 1pot 325 87.29 1b9hA 388 87.91 c.67.1.4 34488 1gpjA 404 88.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3caiA 406 88.71 1l7aA 318 89.69 c.69.1.25 77772