# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.07e-24 c.107.1.2 71342 1k20A 310 5.26e-24 c.107.1.1 68027 2eb0A 307 6.32e-22 2qb7A 397 2.59e-18 1wpnA 188 1.56e-15 c.107.1.1 114826 1d2fA 390 1.002 c.67.1.3 34411 1c7nA 399 1.374 c.67.1.3 34413 1yaaA 412 1.506 c.67.1.1 34280 2o0rA 411 1.793 1pieA 419 2.109 d.14.1.5,d.58.26.7 94706,94707 2z61A 370 2.460 1rrmA 386 4.546 e.22.1.2 105081 1ars 396 4.597 1bw0A 416 5.094 c.67.1.1 34385 1wstA 417 5.131 c.67.1.1 121244 2jejA 358 5.151 d.240.1.1,e.8.1.7 138284,138285 1w7lA 422 5.246 c.67.1.1 109226 1xi9A 406 5.434 c.67.1.1 115355 2o1sA 621 5.715 2cstA 411 5.894 c.67.1.1 34273 1gdeA 389 6.382 c.67.1.1 60456 1j32A 388 6.730 c.67.1.1 77067 1u08A 386 7.370 c.67.1.1 107543 2z20A 432 7.718 1gy8A 397 7.837 c.2.1.2 83376 1oj7A 408 8.128 e.22.1.2 103971 2bkwA 385 8.657 c.67.1.3 128714 2z1yA 397 8.825 1js3A 486 9.253 c.67.1.6 67215 1ynuA 473 9.579 c.67.1.4 123762 1m7yA 435 10.34 c.67.1.4 78761 2zg5A 397 11.61 1sc6A 404 11.98 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2px6A 316 12.42 2dtvA 397 12.52 2r2nA 425 13.02 1j4aA 333 13.41 c.2.1.4,c.23.12.1 71502,71503 1q0rA 298 15.67 c.69.1.28 95508 2gb3A 409 16.33 c.67.1.1 134903 2pocA 367 16.49 2cz9A 350 16.50 3cwqA 209 16.62 1i36A 264 17.18 a.100.1.8,c.2.1.6 71108,71109 1v2dA 381 17.70 c.67.1.1 108281 2ay1A 394 18.78 c.67.1.1 34357 3brsA 289 18.92 2oq2A 261 19.40 3c4vA 426 19.67 1jkmA 358 19.78 c.69.1.2 34633 1v72A 356 20.93 c.67.1.1 119860 2rgyA 290 23.75 1eg5A 384 24.97 c.67.1.3 34429 1vljA 407 25.31 e.22.1.2 108832 1uu1A 335 25.50 c.67.1.1 99993 1yizA 429 26.86 c.67.1.1 123375 1yqgA 263 27.20 1f0kA 364 28.31 c.87.1.2 35465 2ez2A 456 28.67 1jftA 340 30.99 a.35.1.5,c.93.1.1 66652,66653 3bf7A 255 31.10 2gs8A 317 31.38 1m6yA 301 32.31 a.60.13.1,c.66.1.23 78716,78717 1rzuA 485 33.78 c.87.1.8 105140 1ajsA 412 34.54 c.67.1.1 34276 2h78A 302 34.74 2dr1A 386 35.54 3b46A 447 35.65 2gekA 406 35.88 1bn7A 294 36.83 c.69.1.8 34677 1wuuA 399 37.01 d.14.1.5,d.58.26.7 114900,114901 2dejA 350 38.26 1ek6A 348 38.36 c.2.1.2 29800 1lc5A 364 38.50 c.67.1.1 73827 1wolA 122 39.02 2e7jA 371 39.19 1vjoA 393 39.90 c.67.1.3 100827 2z9wA 392 40.40 1nvtA 287 40.88 c.2.1.7,c.58.1.5 86270,86271 3beoA 375 41.40 1r1dA 247 41.50 c.69.1.29 96813 2hoxA 427 41.59 c.67.1.1 136644 1wxiA 275 41.72 c.26.2.1 121400 1kmkA 406 42.62 c.67.1.3 68696 1o4sA 389 42.77 c.67.1.1 86620 1dxy 333 43.99 3c6qA 311 45.84 1m32A 366 46.12 c.67.1.3 78508 2yrrA 353 46.96 1svvA 359 47.19 c.67.1.1 106054 2fssA 365 47.29 1potA 325 47.91 c.94.1.1 35807 1va4A 279 48.64 c.69.1.12 108458 1iirA 415 48.76 c.87.1.5 62453 3bblA 287 48.98 1bykA 255 49.49 c.93.1.1 35706 1m3sA 186 49.76 c.80.1.3 78573 2bwnA 401 50.16 c.67.1.4 129368 3b9oA 440 51.10 1vefA 395 51.37 c.67.1.4 120018 1vimA 200 51.51 c.80.1.3 100758 1wm1A 317 52.73 c.69.1.7 109405 1u4nA 310 54.11 c.69.1.2 113021 1pjaA 302 54.18 c.69.1.13 94758 1kvkA 395 54.70 d.14.1.5,d.58.26.3 73060,73061 1y37A 304 54.71 1zq9A 285 54.71 c.66.1.24 125505 2hy7A 406 55.82 2qr6A 393 58.91 3d02A 303 59.69 2driA 271 60.75 c.93.1.1 35637 2og1A 286 60.76 2fepA 289 60.79 1zoiA 276 64.05 2j6iA 364 65.46 1azwA 313 66.19 c.69.1.7 34658 3b34A 891 66.62 2q71A 356 66.66 1jeoA 180 66.76 c.80.1.3 66611 1t70A 255 67.05 d.159.1.9 112275 2bfdA 400 67.05 1lk9A 448 68.76 c.67.1.1 78057 1zunA 325 70.09 c.26.2.2 125676 1xdwA 331 71.75 1wyzA 242 72.01 c.90.1.1 121471 2douA 376 72.13 2hfsA 332 73.80 1rkxA 357 74.86 c.2.1.2 97631 1qj4A 257 75.21 c.69.1.20 34796 1surA 215 75.37 c.26.2.2 31620 2ioyA 283 75.80 2p1zA 180 76.03 2oatA 439 76.64 c.67.1.4 34452 2cb0A 333 77.09 2q28A 564 78.13 1vp4A 425 78.28 c.67.1.1 113935 1iukA 140 78.81 c.2.1.8 83712 2pv7A 298 78.92 1x7yA 400 78.99 c.36.1.11 114944 2hufA 393 79.47 3caiA 406 80.08 1wvgA 359 80.64 c.2.1.2 121339 2e9xC 219 83.78 1umdA 367 85.73 c.36.1.11 99599 1k92A 455 86.87 c.26.2.1,d.210.1.1 68325,68326 1d3gA 367 87.36 c.1.4.1 28600 2fn9A 290 89.12 2o7rA 338 89.37 1v4vA 376 89.92 c.87.1.3 100313