# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 1.56e-25 c.107.1.2 71342 1k20A 310 6.03e-25 c.107.1.1 68027 2eb0A 307 1.13e-22 2qb7A 397 7.92e-19 1wpnA 188 9.43e-16 c.107.1.1 114826 1d2fA 390 0.9253 c.67.1.3 34411 1c7nA 399 1.495 c.67.1.3 34413 1pieA 419 1.936 d.14.1.5,d.58.26.7 94706,94707 2o0rA 411 2.080 1gy8A 397 3.031 c.2.1.2 83376 2z61A 370 3.164 1rrmA 386 3.424 e.22.1.2 105081 1yaaA 412 3.499 c.67.1.1 34280 1oj7A 408 3.741 e.22.1.2 103971 2jejA 358 3.984 d.240.1.1,e.8.1.7 138284,138285 1ars 396 4.397 1xi9A 406 5.464 c.67.1.1 115355 2cstA 411 5.470 c.67.1.1 34273 2z20A 432 5.881 2px6A 316 7.212 2o1sA 621 7.440 1q0rA 298 7.560 c.69.1.28 95508 1wstA 417 7.822 c.67.1.1 121244 1sc6A 404 8.104 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1j32A 388 8.375 c.67.1.1 77067 1m7yA 435 8.457 c.67.1.4 78761 1bw0A 416 8.894 c.67.1.1 34385 1ynuA 473 9.97 c.67.1.4 123762 1u08A 386 10.10 c.67.1.1 107543 1gdeA 389 10.17 c.67.1.1 60456 1w7lA 422 13.16 c.67.1.1 109226 2bkwA 385 13.64 c.67.1.3 128714 1v2dA 381 13.85 c.67.1.1 108281 2cz9A 350 14.76 2z1yA 397 14.77 1jkmA 358 15.42 c.69.1.2 34633 2gb3A 409 15.68 c.67.1.1 134903 2zg5A 397 17.42 3bf7A 255 17.70 1v72A 356 18.02 c.67.1.1 119860 2ez2A 456 18.86 1j4aA 333 19.08 c.2.1.4,c.23.12.1 71502,71503 2dtvA 397 20.02 1js3A 486 20.17 c.67.1.6 67215 1vljA 407 20.35 e.22.1.2 108832 1ek6A 348 20.74 c.2.1.2 29800 3c4vA 426 20.85 3cwqA 209 21.51 1i36A 264 21.52 a.100.1.8,c.2.1.6 71108,71109 1yqgA 263 21.60 1wxiA 275 22.44 c.26.2.1 121400 2r2nA 425 22.63 2ay1A 394 23.79 c.67.1.1 34357 2pocA 367 24.81 3brsA 289 24.83 1f0kA 364 25.28 c.87.1.2 35465 2rgyA 290 25.42 1pjaA 302 25.56 c.69.1.13 94758 1eg5A 384 25.57 c.67.1.3 34429 1jftA 340 27.47 a.35.1.5,c.93.1.1 66652,66653 2gekA 406 27.86 2dejA 350 28.90 2q71A 356 29.26 2z9wA 392 29.73 1wolA 122 30.56 2h78A 302 30.69 1svvA 359 31.15 c.67.1.1 106054 1va4A 279 32.18 c.69.1.12 108458 1azwA 313 32.29 c.69.1.7 34658 2oq2A 261 33.08 1wuuA 399 33.91 d.14.1.5,d.58.26.7 114900,114901 1kmkA 406 34.39 c.67.1.3 68696 1wm1A 317 34.53 c.69.1.7 109405 1uu1A 335 34.93 c.67.1.1 99993 1potA 325 35.08 c.94.1.1 35807 1ajsA 412 35.37 c.67.1.1 34276 1bn7A 294 35.87 c.69.1.8 34677 2og1A 286 36.37 1qj4A 257 36.40 c.69.1.20 34796 1u2eA 289 37.07 1o4sA 389 37.18 c.67.1.1 86620 1y37A 304 37.63 2cb0A 333 37.96 1vimA 200 37.97 c.80.1.3 100758 1bykA 255 38.46 c.93.1.1 35706 1vefA 395 40.31 c.67.1.4 120018 2p1zA 180 40.74 1u4nA 310 40.93 c.69.1.2 113021 2bfdA 400 41.90 1wvgA 359 42.57 c.2.1.2 121339 2hy7A 406 43.66 1r1dA 247 43.77 c.69.1.29 96813 1jeoA 180 44.21 c.80.1.3 66611 1surA 215 44.24 c.26.2.2 31620 1m3sA 186 45.18 c.80.1.3 78573 1wyzA 242 45.48 c.90.1.1 121471 2pv7A 298 47.82 1zunA 325 49.20 c.26.2.2 125676 2dr1A 386 49.82 1a8qA 274 49.88 c.69.1.12 34702 3b34A 891 50.17 1zq9A 285 51.23 c.66.1.24 125505 2gs8A 317 53.51 1lc5A 364 53.89 c.67.1.1 73827 2pg3A 232 54.07 1vjoA 393 54.30 c.67.1.3 100827 2iksA 293 54.68 1m6yA 301 55.57 a.60.13.1,c.66.1.23 78716,78717 2fssA 365 56.05 1iukA 140 56.18 c.2.1.8 83712 1zoiA 276 57.52 2csuA 457 58.73 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2e7jA 371 58.80 3b9oA 440 58.92 2douA 376 59.06 2bwnA 401 59.33 c.67.1.4 129368 2driA 271 60.70 c.93.1.1 35637 1yizA 429 60.77 c.67.1.1 123375 3beoA 375 61.19 1womA 271 61.37 1w85B 324 61.46 c.36.1.7,c.48.1.2 114336,114337 1jq5A 370 61.47 e.22.1.2 67084 2ioyA 283 61.54 3d02A 303 63.76 1x7yA 400 64.13 c.36.1.11 114944 3bblA 287 64.60 1qgoA 264 64.90 c.92.1.2 35596 2iyfA 430 65.18 2e9xC 219 65.53 1ivnA 190 65.74 c.23.10.5 83719 2hoxA 427 67.32 c.67.1.1 136644 2oatA 439 68.39 c.67.1.4 34452 1pmmA 466 69.06 c.67.1.6 94901 1dxy 333 69.34 1t70A 255 69.65 d.159.1.9 112275 1mj5A 302 69.96 c.69.1.8 91285 2fn9A 290 71.54 1t3iA 420 71.57 c.67.1.3 106354 1k07A 263 72.88 d.157.1.1 77218 3c6qA 311 76.61 2ez9A 603 76.87 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1a8sA 273 77.26 c.69.1.12 34710 2c29D 337 77.46 1rzuA 485 78.94 c.87.1.8 105140 2fepA 289 79.43 2d59A 144 79.84 c.2.1.8 131266 2o7rA 338 81.21 1p5zB 263 81.39 c.37.1.1 87815 2gmsA 390 83.15 1lk9A 448 84.68 c.67.1.1 78057 2rjoA 332 86.06 2gqwA 408 86.10 1m32A 366 86.76 c.67.1.3 78508 2f7bA 233 88.13 1jmkC 230 88.31 c.69.1.22 71747 1uk8A 282 88.51 c.69.1.10 107907 1v4vA 376 88.62 c.87.1.3 100313 1mpxA 615 88.74 b.18.1.13,c.69.1.21 85041,85042