# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 2.12e-26 c.107.1.2 71342 1k20A 310 7.65e-25 c.107.1.1 68027 2eb0A 307 6.34e-22 2qb7A 397 7.83e-20 1wpnA 188 1.84e-16 c.107.1.1 114826 2cb0A 333 2.288 2pocA 367 2.831 2df8A 325 3.912 2o0rA 411 5.675 2z1yA 397 7.205 2qruA 274 7.322 1yqgA 263 7.564 1lldA 319 8.666 c.2.1.5,d.162.1.1 30177,42144 2gwhA 298 9.090 2amlA 373 10.27 2rgyA 290 11.24 1v2dA 381 11.70 c.67.1.1 108281 2oq2A 261 12.74 3brsA 289 13.57 3bf7A 255 14.29 1hyhA 309 16.21 c.2.1.5,d.162.1.1 30150,42117 1r1dA 247 16.35 c.69.1.29 96813 1t2dA 322 16.47 c.2.1.5,d.162.1.1 99084,99085 1vj7A 393 17.13 a.211.1.1,d.218.1.8 100801,100802 2dtvA 397 17.56 3bk2A 562 18.40 1wy5A 317 19.69 c.26.2.5,d.229.1.1 121428,121429 8abp 306 20.15 1u08A 386 20.92 c.67.1.1 107543 3c4vA 426 21.14 3cklA 298 21.41 3bkxA 275 22.32 1rrmA 386 23.27 e.22.1.2 105081 1womA 271 23.99 1ars 396 24.44 1aukA 489 25.83 c.76.1.2 35030 6ldhA 329 25.85 c.2.1.5,d.162.1.1 30161,42128 1x9iA 302 26.02 c.80.1.1 114997 2qvcA 313 26.23 1wxiA 275 28.06 c.26.2.1 121400 2q14A 410 29.97 2cmd 312 29.99 3bfxA 296 30.11 2c29D 337 30.27 1moq 368 31.31 2gqwA 408 32.24 2odaA 196 33.26 2z61A 370 33.45 2ewdA 317 33.82 1eq2A 310 33.83 c.2.1.2 29814 1kqpA 271 34.16 c.26.2.1 72883 1jixA 351 34.48 c.87.1.1 63081 2fn9A 290 34.53 1bykA 255 36.08 c.93.1.1 35706 1f5nA 592 38.53 a.114.1.1,c.37.1.8 19077,32152 2aqjA 538 39.94 1guzA 310 40.41 c.2.1.5,d.162.1.1 65586,65587 1jmkC 230 41.72 c.69.1.22 71747 1c4xA 285 42.23 c.69.1.10 34684 1auk 489 43.19 1rrvA 416 43.45 c.87.1.5 105083 2fnuA 375 44.02 c.67.1.4 133831 2fwrA 472 44.28 c.37.1.19,c.37.1.19 134253,134254 2e5fA 325 44.33 1w7lA 422 44.67 c.67.1.1 109226 1k07A 263 44.67 d.157.1.1 77218 2ousA 331 44.72 2ocgA 254 45.09 8abpA 306 45.61 c.93.1.1 35647 2driA 271 45.73 c.93.1.1 35637 2h3hA 313 45.94 1ff9A 450 46.63 c.2.1.3,d.81.1.2 30039,39954 2a3nA 355 47.37 1wviA 257 47.73 c.108.1.14 114915 2cstA 411 48.13 c.67.1.1 34273 2fepA 289 50.16 1eo1A 124 50.18 c.55.5.1 33739 2ioyA 283 50.35 2c81A 418 50.70 1pswA 348 58.61 c.87.1.7 88287 1d2fA 390 58.64 c.67.1.3 34411 2a2cA 478 61.59 3c6qA 311 62.46 1xngA 268 63.90 c.26.2.1 122186 2zg5A 397 64.73 2iksA 293 65.84 2e85A 159 66.17 1o69A 394 66.83 c.67.1.4 92560 1ez4A 318 68.75 c.2.1.5,d.162.1.1 64917,64918 2qxlA 658 69.01 1m7yA 435 69.16 c.67.1.4 78761 2cduA 452 69.43 2rjoA 332 69.66 3d02A 303 71.09 1brtA 277 72.06 c.69.1.12 34699 2iyfA 430 72.56 1ajsA 412 73.58 c.67.1.1 34276 1m6yA 301 73.66 a.60.13.1,c.66.1.23 78716,78717 1k92A 455 73.79 c.26.2.1,d.210.1.1 68325,68326 2yrrA 353 73.79 1hp1A 516 74.17 d.114.1.1,d.159.1.2 70976,70977 1vmeA 410 74.99 c.23.5.1,d.157.1.3 108893,108894 1gca 309 75.12 1c7nA 399 76.90 c.67.1.3 34413 2qu7A 288 77.42 1oc2A 348 78.01 c.2.1.2 92765 1z82A 335 78.43 1ks9A 291 78.52 a.100.1.7,c.2.1.6 68857,68858 2p1zA 180 79.25 2jejA 358 80.36 d.240.1.1,e.8.1.7 138284,138285 1r7mA 235 80.55 d.95.2.1,d.95.2.1 111713,111714 2ahrA 259 81.57 a.100.1.10,c.2.1.6 126775,126776 1potA 325 81.73 c.94.1.1 35807 2iw1A 374 82.77 c.87.1.8 137738 1miwA 404 83.98 a.173.1.1,d.218.1.4 79162,79163 3d1cA 369 84.00 3c0wA 235 84.52 1azwA 313 85.51 c.69.1.7 34658 1udcA 338 89.99 c.2.1.2 29785