# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.51e-27 c.107.1.2 71342 1k20A 310 2.33e-25 c.107.1.1 68027 2eb0A 307 1.24e-22 2qb7A 397 1.11e-18 1wpnA 188 2.18e-16 c.107.1.1 114826 2z61A 370 3.578 2o0rA 411 5.983 2p1zA 180 6.098 1hyhA 309 6.283 c.2.1.5,d.162.1.1 30150,42117 1d2fA 390 7.806 c.67.1.3 34411 1w7lA 422 7.953 c.67.1.1 109226 2c0rA 362 8.278 c.67.1.4 129604 2oq2A 261 8.373 2pocA 367 8.515 3bf7A 255 8.713 2ewdA 317 9.744 1w23A 360 9.901 c.67.1.4 114088 1yqgA 263 10.56 2z20A 432 11.80 2rgyA 290 11.97 2dr1A 386 12.43 1m7yA 435 12.45 c.67.1.4 78761 3beoA 375 12.81 2fn9A 290 14.15 8abp 306 14.76 3c4vA 426 14.92 1wstA 417 15.15 c.67.1.1 121244 2bkwA 385 15.70 c.67.1.3 128714 1jixA 351 15.75 c.87.1.1 63081 1c7nA 399 15.77 c.67.1.3 34413 3brsA 289 15.85 1pzgA 331 15.99 c.2.1.5,d.162.1.1 95425,95426 1xi9A 406 16.09 c.67.1.1 115355 2fvyA 309 16.32 c.93.1.1 134227 2dtvA 397 16.64 1rrmA 386 17.71 e.22.1.2 105081 2zg5A 397 18.62 1bykA 255 18.71 c.93.1.1 35706 2fnuA 375 18.74 c.67.1.4 133831 2rjoA 332 19.06 1gdeA 389 19.32 c.67.1.1 60456 1u08A 386 19.51 c.67.1.1 107543 2cb0A 333 20.80 2jejA 358 21.12 d.240.1.1,e.8.1.7 138284,138285 1t2dA 322 21.38 c.2.1.5,d.162.1.1 99084,99085 1yizA 429 22.52 c.67.1.1 123375 2e85A 159 22.69 6ldhA 329 22.92 c.2.1.5,d.162.1.1 30161,42128 2cduA 452 23.69 1guzA 310 24.25 c.2.1.5,d.162.1.1 65586,65587 1t70A 255 25.17 d.159.1.9 112275 1vdmA 153 25.88 c.61.1.1 119994 1j32A 388 25.98 c.67.1.1 77067 1vimA 200 26.06 c.80.1.3 100758 8abpA 306 26.23 c.93.1.1 35647 1ez4A 318 26.95 c.2.1.5,d.162.1.1 64917,64918 2fepA 289 27.21 2z1yA 397 27.44 2qruA 274 28.29 1vj7A 393 28.57 a.211.1.1,d.218.1.8 100801,100802 3cvjA 243 28.94 1gudA 288 29.49 c.93.1.1 83326 1gca 309 29.61 1wy5A 317 30.66 c.26.2.5,d.229.1.1 121428,121429 1k92A 455 30.79 c.26.2.1,d.210.1.1 68325,68326 1m32A 366 30.80 c.67.1.3 78508 1zejA 293 31.05 1womA 271 33.00 1jmkC 230 33.21 c.69.1.22 71747 2gekA 406 34.46 1zunA 325 34.48 c.26.2.2 125676 1jf9A 408 34.67 c.67.1.3 62931 1v73A 342 34.85 1yzyA 413 35.73 c.146.1.1 124292 1ars 396 35.74 2ahrA 259 36.31 a.100.1.10,c.2.1.6 126775,126776 2qvcA 313 36.38 2amlA 373 36.95 1uu1A 335 39.29 c.67.1.1 99993 2ez9A 603 40.88 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1lldA 319 41.47 c.2.1.5,d.162.1.1 30177,42144 1i36A 264 42.00 a.100.1.8,c.2.1.6 71108,71109 1pmmA 466 43.06 c.67.1.6 94901 2iksA 293 43.51 2gmsA 390 43.84 2yrrA 353 43.88 2gb3A 409 44.53 c.67.1.1 134903 1kmkA 406 45.54 c.67.1.3 68696 1t8tA 271 45.57 c.37.1.5 106685 2hy7A 406 45.67 2fwrA 472 45.87 c.37.1.19,c.37.1.19 134253,134254 3bblA 287 46.94 1f0kA 364 47.70 c.87.1.2 35465 3d02A 303 50.01 2cz9A 350 50.37 2df8A 325 50.67 1ff9A 450 51.48 c.2.1.3,d.81.1.2 30039,39954 1y7tA 327 53.80 c.2.1.5,d.162.1.1 122718,122719 1e4eA 343 56.30 c.30.1.2,d.142.1.1 59221,59222 2yvaA 196 56.60 1eg5A 384 57.17 c.67.1.3 34429 2dkjA 407 57.32 2qvbA 297 58.52 2hufA 393 58.80 2driA 271 59.26 c.93.1.1 35637 1wxiA 275 59.56 c.26.2.1 121400 1o4sA 389 60.16 c.67.1.1 86620 1nriA 306 61.60 c.80.1.3 86123 3c6qA 311 61.91 3tglA 269 61.96 c.69.1.17 34733 2dc1A 236 63.64 2px6A 316 63.80 1vljA 407 65.11 e.22.1.2 108832 2uz1A 563 65.33 2e57A 637 66.23 1m3sA 186 66.49 c.80.1.3 78573 2h3hA 313 66.80 1vp4A 425 67.48 c.67.1.1 113935 2ocgA 254 67.55 1c4xA 285 67.88 c.69.1.10 34684 2dy0A 190 68.03 1rzuA 485 68.24 c.87.1.8 105140 1mdoA 393 68.55 c.67.1.4 79013 1vjoA 393 68.73 c.67.1.3 100827 2ioyA 283 69.80 2qs9A 194 69.99 3ck2A 176 70.40 1tk9A 188 71.52 c.80.1.3 107082 1bd0A 388 71.77 b.49.2.2,c.1.6.1 26480,28642 2iyfA 430 72.78 1p5dX 463 72.78 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1xklA 273 74.33 c.69.1.20 115410 1nhsA 447 75.34 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1ni5A 433 77.58 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1m6yA 301 78.89 a.60.13.1,c.66.1.23 78716,78717 1hyeA 313 79.45 c.2.1.5,d.162.1.1 61400,61401 3ctpA 330 80.94 1qj4A 257 82.09 c.69.1.20 34796 2i3dA 249 83.06 1a8sA 273 84.13 c.69.1.12 34710 2ordA 397 84.18 2hmvA 144 84.39 c.2.1.9 136615 1mldA 314 85.64 c.2.1.5,d.162.1.1 30122,42089 3bk2A 562 85.82 2aqjA 538 86.08 1xgkA 352 86.42 c.2.1.2 115286 1v4vA 376 86.54 c.87.1.3 100313 3cs3A 277 86.90 1x3mA 415 88.18 c.55.1.2,c.55.1.2 121664,121665 2o4cA 380 88.60 2h78A 302 89.02