# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.26e-28 c.107.1.1 68027 1i74A 309 7.88e-27 c.107.1.1 61867 1ir6A 424 1.01e-26 c.107.1.2 71342 2eb0A 307 1.07e-24 2qb7A 397 2.38e-18 1wpnA 188 4.09e-17 c.107.1.1 114826 2rgyA 290 1.174 3cs3A 277 1.307 1rrmA 386 1.622 e.22.1.2 105081 1ynuA 473 1.681 c.67.1.4 123762 1d2fA 390 3.295 c.67.1.3 34411 1qs0B 338 3.752 c.36.1.7,c.48.1.2 31830,33103 1bw0A 416 3.760 c.67.1.1 34385 3bblA 287 3.792 1vjoA 393 3.983 c.67.1.3 100827 2dr1A 386 4.741 1surA 215 5.083 c.26.2.2 31620 2fepA 289 5.137 1pjqA 457 5.423 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1m32A 366 6.093 c.67.1.3 78508 2driA 271 6.550 c.93.1.1 35637 2o20A 332 6.784 2dri 271 7.444 1gudA 288 7.908 c.93.1.1 83326 1b8gA 429 8.281 c.67.1.4 34499 1sc6A 404 9.843 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1vljA 407 9.98 e.22.1.2 108832 2bwnA 401 10.41 c.67.1.4 129368 2oq2A 261 10.92 1d3gA 367 10.98 c.1.4.1 28600 2gs8A 317 11.06 1iugA 352 11.06 c.67.1.3 90699 2gt1A 326 11.19 1vimA 200 11.58 c.80.1.3 100758 1qz9A 416 11.68 c.67.1.3 96621 2j6iA 364 11.76 1pieA 419 12.18 d.14.1.5,d.58.26.7 94706,94707 1zunA 325 13.34 c.26.2.2 125676 1u6zA 513 13.75 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2fssA 365 14.36 1a04A 215 14.83 a.4.6.2,c.23.1.1 16234,31089 8abp 306 15.15 3brsA 289 16.42 2d0iA 333 16.59 1m3sA 186 16.87 c.80.1.3 78573 1gdhA 320 17.04 c.2.1.4,c.23.12.1 30095,31355 2c31A 568 17.32 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1c7nA 399 17.79 c.67.1.3 34413 2dejA 350 19.00 1jeoA 180 19.50 c.80.1.3 66611 2fn9A 290 20.60 1f0kA 364 20.83 c.87.1.2 35465 1eg5A 384 20.85 c.67.1.3 34429 2iksA 293 21.33 1r7mA 235 22.17 d.95.2.1,d.95.2.1 111713,111714 2pocA 367 22.93 3brqA 296 23.02 2a3nA 355 23.47 2r2nA 425 23.80 1m6sA 347 24.60 c.67.1.1 78701 2ejaA 338 25.25 1moqA 368 25.52 c.80.1.1 35302 2qu7A 288 25.64 1gdeA 389 26.31 c.67.1.1 60456 2bfdA 400 26.34 2a1fA 247 26.50 c.73.1.3 125991 1pswA 348 26.50 c.87.1.7 88287 1p5dX 463 26.50 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2ax4A 198 26.57 1wwkA 307 26.61 2q28A 564 26.62 3c3kA 285 26.94 1xngA 268 27.55 c.26.2.1 122186 2oi2A 292 27.93 3cogA 403 28.33 1tlfA 301 28.78 c.93.1.1 35687 2ioyA 283 28.85 1fx7A 230 29.58 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2fvyA 309 30.77 c.93.1.1 134227 1x9iA 302 31.00 c.80.1.1 114997 1mx3A 347 31.13 c.2.1.4,c.23.12.1 79638,79639 2fuvA 549 31.26 1s3jA 155 31.62 a.4.5.28 98437 2hufA 393 31.77 1ko7A 314 33.55 c.98.2.1,c.91.1.2 72797,72798 1p3wA 404 33.67 c.67.1.3 87752 1jg8A 347 33.73 c.67.1.1 62946 1dbqA 289 33.73 c.93.1.1 35666 1k2yX 463 33.82 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2z9wA 392 34.82 1m7yA 435 34.86 c.67.1.4 78761 1qmgA 524 34.99 a.100.1.2,c.2.1.6 18785,30182 1wd7A 261 35.88 c.113.1.1 114526 1gpjA 404 37.55 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2jejA 358 37.59 d.240.1.1,e.8.1.7 138284,138285 2akoA 251 37.68 c.73.1.3 126923 1f0nA 285 38.10 c.69.1.3 34636 1lsuA 147 38.34 c.2.1.9 74250 2jbwA 386 38.83 1xdwA 331 38.91 1wy5A 317 39.86 c.26.2.5,d.229.1.1 121428,121429 1nytA 271 39.90 c.2.1.7,c.58.1.5 86417,86418 1j4aA 333 41.36 c.2.1.4,c.23.12.1 71502,71503 1moq 368 41.37 1q6zA 528 41.39 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2e87A 357 41.73 1vpdA 299 43.09 a.100.1.1,c.2.1.6 113951,113952 1wyuB 474 43.51 c.67.1.7 121453 1o4sA 389 43.51 c.67.1.1 86620 2o6yA 521 43.52 1gca 309 43.62 2i7gA 376 43.94 1wqaA 455 43.94 1wyuA 438 44.77 c.67.1.7 121452 1pmmA 466 44.91 c.67.1.6 94901 2g76A 335 45.49 1kmkA 406 45.59 c.67.1.3 68696 1dxy 333 46.00 1r8eA 278 48.20 a.6.1.3,d.60.1.1 104843,104844 2jfuA 291 48.60 1jr2A 286 48.99 c.113.1.1 67111 1ve2A 235 49.32 c.90.1.1 120008 1psdA 409 50.16 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vi2A 300 50.40 c.2.1.7,c.58.1.5 100726,100727 1wuuA 399 51.22 d.14.1.5,d.58.26.7 114900,114901 1vhwA 253 51.74 c.56.2.1 100706 2ac7A 235 52.13 c.56.2.1 126543 2qwwA 154 53.41 1f5qB 252 53.49 a.74.1.1,a.74.1.1 18362,18363 1bykA 255 53.61 c.93.1.1 35706 3bilA 348 53.84 2a2cA 478 54.21 2gcgA 330 54.78 1m22A 503 55.57 c.117.1.1 78464 8abpA 306 55.89 c.93.1.1 35647 2o4cA 380 56.94 2e7jA 371 57.17 1npyA 271 57.60 c.2.1.7,c.58.1.5 85995,85996 1fnsA 196 58.26 c.62.1.1 34136 3ctpA 330 58.29 3ce9A 354 58.66 3c6qA 311 59.10 1sur 215 59.66 1y2mA 716 60.17 1okrA 123 60.32 a.4.5.39 93269 2r0bA 154 60.35 1yzyA 413 61.17 c.146.1.1 124292 1cs1A 386 61.53 c.67.1.3 34399 2pq6A 482 63.05 2hmvA 144 63.42 c.2.1.9 136615 1u08A 386 63.47 c.67.1.1 107543 1mgpA 313 63.52 c.119.1.1 79098 1q74A 303 63.95 c.134.1.1 96019 2ac2A 309 64.16 1j5xA 342 64.37 c.80.1.1 71591 2z20A 432 64.78 2pq7A 220 65.23 1sd4A 126 66.44 a.4.5.39 105428 1u5kA 244 66.46 b.40.4.13,g.45.1.2 113038,113039 2c3zA 222 66.74 2f2cA 254 67.84 a.74.1.1,a.74.1.1 132805,132806 1rzuA 485 67.97 c.87.1.8 105140 2dwuA 276 68.22 1v71A 323 68.30 c.79.1.1 119859 2pi1A 334 68.53 2o1sA 621 69.08 1q0qA 406 69.49 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1lj9A 144 69.70 a.4.5.28 78035 1khtA 192 70.28 c.37.1.1 84401 1ukfA 188 70.36 d.3.1.10 99488 1iirA 415 70.51 c.87.1.5 62453 3c4vA 426 70.74 2pjdA 343 70.96 1vp4A 425 71.10 c.67.1.1 113935 1wxiA 275 71.22 c.26.2.1 121400 2hm7A 310 71.31 2iw1A 374 71.51 c.87.1.8 137738 1wcwA 261 71.54 2ewsA 287 71.74 1zclA 180 72.14 2nt2A 145 72.49 1j0aA 325 72.76 c.79.1.1 83871 1ozhA 566 72.86 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2g1uA 155 73.05 1u2eA 289 73.27 2o1eA 312 73.47 1snyA 267 74.08 c.2.1.2 105833 1jftA 340 74.15 a.35.1.5,c.93.1.1 66652,66653 1p77A 272 74.15 c.2.1.7,c.58.1.5 94214,94215 1dfoA 417 74.97 c.67.1.4 34480 2h0aA 276 77.05 2fq6A 415 79.16 c.67.1.3 133939 1auoA 218 79.43 c.69.1.14 34716 1kfcA 268 80.46 c.1.2.4 77371 2qiwA 255 81.31 1lucA 355 81.59 c.1.16.1 29547 2pn6A 150 82.30 2pg9A 337 83.09 1j32A 388 83.50 c.67.1.1 77067 1id1A 153 84.02 c.2.1.9 62286 2p1zA 180 84.82 2cb0A 333 84.88 1xi9A 406 85.00 c.67.1.1 115355 1uk8A 282 85.74 c.69.1.10 107907 2cchB 260 88.00 a.74.1.1,a.74.1.1 130237,130238 1tibA 269 88.21 c.69.1.17 34738 3c85A 183 88.91 3beoA 375 89.61 1n4aA 252 89.96 c.92.2.2 85317