# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.53e-29 c.107.1.1 68027 1i74A 309 1.93e-27 c.107.1.1 61867 1ir6A 424 6.62e-27 c.107.1.2 71342 2eb0A 307 4.72e-26 2qb7A 397 3.68e-20 1wpnA 188 1.08e-17 c.107.1.1 114826 2rgyA 290 0.3373 3cs3A 277 1.313 3bblA 287 1.397 2driA 271 1.895 c.93.1.1 35637 2fepA 289 1.935 1rrmA 386 2.064 e.22.1.2 105081 3c3kA 285 2.210 2dri 271 2.332 1vljA 407 2.471 e.22.1.2 108832 1pjqA 457 2.786 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2fn9A 290 3.379 1gudA 288 3.792 c.93.1.1 83326 1ynuA 473 4.126 c.67.1.4 123762 3brqA 296 4.689 2fvyA 309 5.989 c.93.1.1 134227 2dejA 350 6.391 2dr1A 386 6.762 2ioyA 283 7.051 2iksA 293 7.189 2ejaA 338 7.564 1p5dX 463 7.595 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1k2yX 463 7.676 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1wqaA 455 8.576 2jbwA 386 8.885 2o20A 332 9.226 2h0aA 276 9.739 1jeoA 180 9.774 c.80.1.3 66611 1m32A 366 9.846 c.67.1.3 78508 1b8gA 429 10.24 c.67.1.4 34499 3ctpA 330 10.39 3brsA 289 10.68 1d2fA 390 10.71 c.67.1.3 34411 2jfuA 291 11.13 2oq2A 261 11.15 1gca 309 11.41 1pieA 419 11.64 d.14.1.5,d.58.26.7 94706,94707 2gt1A 326 12.02 1zunA 325 12.66 c.26.2.2 125676 1sc6A 404 12.84 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3bilA 348 12.96 2j6iA 364 12.96 1f0nA 285 13.60 c.69.1.3 34636 1ko7A 314 13.65 c.98.2.1,c.91.1.2 72797,72798 1wd7A 261 15.01 c.113.1.1 114526 1qs0B 338 15.33 c.36.1.7,c.48.1.2 31830,33103 1kkhA 317 15.35 d.14.1.5,d.58.26.3 72645,72646 2gs8A 317 15.79 8abp 306 15.82 1f0kA 364 16.67 c.87.1.2 35465 1dbqA 289 16.78 c.93.1.1 35666 1tlfA 301 17.92 c.93.1.1 35687 1surA 215 18.42 c.26.2.2 31620 1jftA 340 19.15 a.35.1.5,c.93.1.1 66652,66653 2o6yA 521 19.26 1bykA 255 19.53 c.93.1.1 35706 2q28A 564 19.54 1d3gA 367 20.16 c.1.4.1 28600 2qu7A 288 20.99 2fuvA 549 22.24 1m22A 503 22.57 c.117.1.1 78464 1x9iA 302 23.09 c.80.1.1 114997 2e7jA 371 23.72 1wxiA 275 24.01 c.26.2.1 121400 1ve2A 235 24.09 c.90.1.1 120008 1r8eA 278 24.81 a.6.1.3,d.60.1.1 104843,104844 1bw0A 416 25.34 c.67.1.1 34385 1wuuA 399 26.48 d.14.1.5,d.58.26.7 114900,114901 2a3nA 355 27.00 1x92A 199 27.24 c.80.1.3 114976 1vimA 200 27.47 c.80.1.3 100758 1m3sA 186 30.43 c.80.1.3 78573 1qz9A 416 30.58 c.67.1.3 96621 2ac2A 309 30.60 2yvaA 196 30.66 1gdhA 320 31.60 c.2.1.4,c.23.12.1 30095,31355 2hufA 393 34.12 1wcwA 261 35.25 1ozhA 566 35.31 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2c31A 568 36.80 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1pswA 348 37.10 c.87.1.7 88287 2oi2A 292 37.94 1vjoA 393 38.81 c.67.1.3 100827 2i2wA 212 39.16 8abpA 306 40.03 c.93.1.1 35647 2nlyA 245 40.09 c.6.2.7 138364 2rjoA 332 41.32 1khtA 192 41.85 c.37.1.1 84401 2pg9A 337 42.84 2cwcA 303 42.93 1iugA 352 43.21 c.67.1.3 90699 2fssA 365 45.23 1c7nA 399 45.56 c.67.1.3 34413 1u6zA 513 46.42 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2pocA 367 46.89 1uk8A 282 47.54 c.69.1.10 107907 1wwkA 307 47.61 2qwwA 154 48.47 2bwnA 401 48.94 c.67.1.4 129368 1rzuA 485 50.28 c.87.1.8 105140 1qdeA 224 50.58 c.37.1.19 32410 2cb0A 333 51.38 1kmkA 406 51.87 c.67.1.3 68696 1fnsA 196 52.14 c.62.1.1 34136 1eg5A 384 52.63 c.67.1.3 34429 2akoA 251 52.73 c.73.1.3 126923 1ukfA 188 53.10 d.3.1.10 99488 1u5kA 244 53.33 b.40.4.13,g.45.1.2 113038,113039 2a2cA 478 53.34 2gcgA 330 55.21 1dxy 333 56.32 2qmqA 286 57.82 1jyeA 349 58.22 c.93.1.1 67455 1psdA 409 58.24 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2ax4A 198 58.89 2z1mA 345 59.01 1owlA 484 60.42 a.99.1.1,c.28.1.1 93647,93648 1npyA 271 60.55 c.2.1.7,c.58.1.5 85995,85996 1gpjA 404 60.84 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1o4sA 389 62.18 c.67.1.1 86620 2p1zA 180 62.51 1eluA 390 63.87 c.67.1.3 34434 1t3gA 159 65.56 1qtrA 317 66.77 c.69.1.7 34660 1xngA 268 68.07 c.26.2.1 122186 1vfsA 386 68.44 b.49.2.2,c.1.6.1 108584,108585 1i36A 264 68.65 a.100.1.8,c.2.1.6 71108,71109 1a04A 215 69.54 a.4.6.2,c.23.1.1 16234,31089 2hfsA 332 69.91 2oq1A 254 71.05 d.93.1.1,d.93.1.1 139220,139221 2d0iA 333 71.69 3beoA 375 71.80 1e5dA 402 72.39 c.23.5.1,d.157.1.3 31208,42061 2jejA 358 73.06 d.240.1.1,e.8.1.7 138284,138285 3tmkA 216 74.18 c.37.1.1 31920 1o0wA 252 75.18 a.149.1.1,d.50.1.1 80751,80752 1gdeA 389 75.27 c.67.1.1 60456 2f7lA 455 76.19 2i3dA 249 76.94 2e87A 357 76.97 1jx6A 342 77.21 c.93.1.1 67406 1xdwA 331 77.58 1vpdA 299 77.61 a.100.1.1,c.2.1.6 113951,113952 1s3jA 155 77.84 a.4.5.28 98437 1poxA 585 78.15 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1p3wA 404 78.59 c.67.1.3 87752 2v8pA 271 80.21 2fq6A 415 80.69 c.67.1.3 133939 2qghA 425 80.72 2df8A 325 81.31 4crxA 322 81.69 a.60.9.1,d.163.1.1 18095,42155 1q06A 135 83.40 a.6.1.3 95493 2brxA 244 83.56 c.73.1.3 129028 1u2eA 289 84.18 2g9iA 249 84.87 d.340.1.1 134806 3c6qA 311 84.89 1c4xA 285 85.57 c.69.1.10 34684 1kfcA 268 87.27 c.1.2.4 77371 1tjyA 316 87.69 c.93.1.1 107062 1pbvA 195 87.96 a.118.3.1 19179 2r3bA 310 89.94