# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.72e-27 c.107.1.1 68027 1i74A 309 1.32e-25 c.107.1.1 61867 1ir6A 424 2.55e-25 c.107.1.2 71342 2eb0A 307 2.49e-24 2qb7A 397 5.07e-19 1wpnA 188 1.44e-16 c.107.1.1 114826 2rgyA 290 0.5340 3cs3A 277 1.485 1rrmA 386 1.798 e.22.1.2 105081 2driA 271 2.428 c.93.1.1 35637 3bblA 287 2.435 3c3kA 285 2.753 1pjqA 457 2.788 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dri 271 2.824 2fepA 289 2.829 1ynuA 473 4.032 c.67.1.4 123762 2ejaA 338 4.886 2dejA 350 5.042 1gudA 288 5.213 c.93.1.1 83326 1vljA 407 5.699 e.22.1.2 108832 1m32A 366 5.710 c.67.1.3 78508 2fn9A 290 5.996 1d2fA 390 6.272 c.67.1.3 34411 3brqA 296 6.954 3ctpA 330 7.319 1jeoA 180 8.185 c.80.1.3 66611 1b8gA 429 8.560 c.67.1.4 34499 2dr1A 386 8.740 2fvyA 309 8.854 c.93.1.1 134227 2ioyA 283 9.133 2h0aA 276 9.644 2j6iA 364 10.02 2q28A 564 10.06 1pieA 419 10.12 d.14.1.5,d.58.26.7 94706,94707 1p5dX 463 10.76 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2iksA 293 11.52 2gs8A 317 11.68 3brsA 289 11.83 2jbwA 386 12.01 2gt1A 326 12.36 1k2yX 463 12.39 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1wqaA 455 12.68 2jfuA 291 13.02 2o20A 332 13.32 1f0kA 364 14.96 c.87.1.2 35465 1qs0B 338 15.34 c.36.1.7,c.48.1.2 31830,33103 1gca 309 15.43 1bw0A 416 15.96 c.67.1.1 34385 1zunA 325 17.07 c.26.2.2 125676 3bilA 348 17.26 1x9iA 302 17.47 c.80.1.1 114997 1wd7A 261 18.61 c.113.1.1 114526 1jftA 340 18.84 a.35.1.5,c.93.1.1 66652,66653 2c31A 568 18.98 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1wuuA 399 20.12 d.14.1.5,d.58.26.7 114900,114901 1bykA 255 20.42 c.93.1.1 35706 2oq2A 261 20.77 1kkhA 317 20.78 d.14.1.5,d.58.26.3 72645,72646 1rzuA 485 21.22 c.87.1.8 105140 2oi2A 292 21.31 1wxiA 275 21.87 c.26.2.1 121400 1r8eA 278 21.89 a.6.1.3,d.60.1.1 104843,104844 1iugA 352 21.93 c.67.1.3 90699 1vimA 200 22.11 c.80.1.3 100758 2e7jA 371 22.13 1dbqA 289 22.34 c.93.1.1 35666 1ozhA 566 22.66 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1tlfA 301 23.21 c.93.1.1 35687 1gdhA 320 23.86 c.2.1.4,c.23.12.1 30095,31355 1m3sA 186 24.50 c.80.1.3 78573 1m22A 503 24.56 c.117.1.1 78464 1f0nA 285 24.71 c.69.1.3 34636 1sc6A 404 25.14 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2qu7A 288 27.58 8abp 306 27.63 2fuvA 549 27.98 2yvaA 196 28.03 2pocA 367 28.13 2fssA 365 29.41 1ve2A 235 30.21 c.90.1.1 120008 1ko7A 314 30.23 c.98.2.1,c.91.1.2 72797,72798 1vjoA 393 31.11 c.67.1.3 100827 1eg5A 384 31.61 c.67.1.3 34429 1x92A 199 33.06 c.80.1.3 114976 1qz9A 416 33.89 c.67.1.3 96621 2cb0A 333 34.57 1surA 215 34.83 c.26.2.2 31620 1c7nA 399 35.35 c.67.1.3 34413 2a3nA 355 36.64 1d3gA 367 37.43 c.1.4.1 28600 2hfsA 332 38.46 2pg9A 337 38.97 2hufA 393 39.89 2a2cA 478 41.33 2p1zA 180 43.54 1poxA 585 44.79 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1pswA 348 46.25 c.87.1.7 88287 2i2wA 212 46.56 1wwkA 307 46.67 1qdeA 224 47.21 c.37.1.19 32410 1kmkA 406 47.52 c.67.1.3 68696 2r2nA 425 48.12 1wcwA 261 48.50 2o6yA 521 48.52 1fnsA 196 49.90 c.62.1.1 34136 2bwnA 401 50.06 c.67.1.4 129368 1uk8A 282 50.61 c.69.1.10 107907 2qmqA 286 50.90 2nlyA 245 51.03 c.6.2.7 138364 2px6A 316 51.59 3tmkA 216 52.90 c.37.1.1 31920 1o4sA 389 53.75 c.67.1.1 86620 2fq6A 415 54.13 c.67.1.3 133939 2rjoA 332 54.47 2z9wA 392 56.39 1qtrA 317 57.07 c.69.1.7 34660 1c4xA 285 58.29 c.69.1.10 34684 2pgnA 589 58.90 1khtA 192 60.29 c.37.1.1 84401 2fyfA 398 60.91 1jyeA 349 61.15 c.93.1.1 67455 1dxy 333 61.41 1gpjA 404 63.10 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1jx6A 342 63.17 c.93.1.1 67406 1q0qA 406 64.51 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1o0wA 252 65.30 a.149.1.1,d.50.1.1 80751,80752 1npyA 271 65.77 c.2.1.7,c.58.1.5 85995,85996 2df8A 325 66.61 2v8pA 271 66.86 3beoA 375 67.88 1xdwA 331 67.92 2qwwA 154 68.12 2brxA 244 69.22 c.73.1.3 129028 1q6zA 528 69.93 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 8abpA 306 70.24 c.93.1.1 35647 1r3dA 264 70.76 c.69.1.35 111680 2jejA 358 70.84 d.240.1.1,e.8.1.7 138284,138285 2ac2A 309 71.43 2z1mA 345 71.87 1gdeA 389 72.05 c.67.1.1 60456 1t3gA 159 72.08 2q71A 356 74.11 2yv1A 294 74.34 1mtzA 293 75.21 c.69.1.7 79467 2ay1A 394 75.44 c.67.1.1 34357 1p3wA 404 75.91 c.67.1.3 87752 1eluA 390 76.19 c.67.1.3 34434 3cogA 403 78.55 2qryA 330 78.87 1e5dA 402 79.12 c.23.5.1,d.157.1.3 31208,42061 1moqA 368 80.09 c.80.1.1 35302 2gcgA 330 80.20 1m65A 245 80.29 c.6.3.1 84847 2d59A 144 81.32 c.2.1.8 131266 2d0iA 333 81.86 1qmgA 524 82.37 a.100.1.2,c.2.1.6 18785,30182 2i3dA 249 82.42 2cwcA 303 82.97 2a1fA 247 83.79 c.73.1.3 125991 2infA 359 84.71 2pq7A 220 85.69 2iw1A 374 86.26 c.87.1.8 137738 1u5kA 244 86.40 b.40.4.13,g.45.1.2 113038,113039 1a04A 215 86.55 a.4.6.2,c.23.1.1 16234,31089 1psdA 409 86.91 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2amlA 373 88.69 1u6zA 513 88.92 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1mx3A 347 89.30 c.2.1.4,c.23.12.1 79638,79639 1owlA 484 89.42 a.99.1.1,c.28.1.1 93647,93648 2pjdA 343 89.54