# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 9.43e-28 c.107.1.1 68027 1i74A 309 3.34e-26 c.107.1.1 61867 1ir6A 424 9.78e-26 c.107.1.2 71342 2eb0A 307 8.93e-25 2qb7A 397 1.92e-19 1wpnA 188 6.86e-17 c.107.1.1 114826 2rgyA 290 0.4446 3cs3A 277 1.198 2driA 271 1.656 c.93.1.1 35637 1rrmA 386 1.756 e.22.1.2 105081 3bblA 287 2.088 3c3kA 285 2.160 2dri 271 2.275 2fepA 289 2.514 2fn9A 290 2.805 1pjqA 457 3.182 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ynuA 473 3.671 c.67.1.4 123762 2dejA 350 4.184 1d2fA 390 4.614 c.67.1.3 34411 1vljA 407 4.631 e.22.1.2 108832 1gudA 288 4.929 c.93.1.1 83326 3brqA 296 5.551 2ejaA 338 6.287 1m32A 366 6.953 c.67.1.3 78508 2fvyA 309 7.050 c.93.1.1 134227 2dr1A 386 7.275 2h0aA 276 8.141 3ctpA 330 8.677 2q28A 564 8.864 1b8gA 429 9.036 c.67.1.4 34499 2iksA 293 9.164 1qs0B 338 9.401 c.36.1.7,c.48.1.2 31830,33103 2jbwA 386 9.624 3brsA 289 9.687 2gs8A 317 9.821 1pieA 419 9.97 d.14.1.5,d.58.26.7 94706,94707 2o20A 332 10.11 2ioyA 283 10.29 1p5dX 463 10.93 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1jeoA 180 11.28 c.80.1.3 66611 1bw0A 416 11.74 c.67.1.1 34385 1k2yX 463 12.69 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 3bilA 348 13.00 1wqaA 455 13.08 2gt1A 326 13.54 1f0nA 285 14.23 c.69.1.3 34636 1zunA 325 15.48 c.26.2.2 125676 1f0kA 364 15.72 c.87.1.2 35465 1wuuA 399 15.78 d.14.1.5,d.58.26.7 114900,114901 2c31A 568 16.38 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2j6iA 364 16.77 1gca 309 17.98 1tlfA 301 18.17 c.93.1.1 35687 1kkhA 317 18.39 d.14.1.5,d.58.26.3 72645,72646 2qu7A 288 18.63 1jftA 340 19.05 a.35.1.5,c.93.1.1 66652,66653 2oq2A 261 19.07 1ozhA 566 19.31 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1dbqA 289 19.48 c.93.1.1 35666 1bykA 255 19.54 c.93.1.1 35706 1wd7A 261 19.76 c.113.1.1 114526 8abp 306 20.78 1ko7A 314 21.89 c.98.2.1,c.91.1.2 72797,72798 1qz9A 416 22.43 c.67.1.3 96621 2oi2A 292 23.11 1iugA 352 23.18 c.67.1.3 90699 1vimA 200 23.75 c.80.1.3 100758 2jfuA 291 24.23 1x9iA 302 26.19 c.80.1.1 114997 1c7nA 399 26.29 c.67.1.3 34413 1r8eA 278 26.49 a.6.1.3,d.60.1.1 104843,104844 2o6yA 521 27.65 1sc6A 404 27.88 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1vjoA 393 28.58 c.67.1.3 100827 1d3gA 367 29.06 c.1.4.1 28600 1ve2A 235 29.96 c.90.1.1 120008 1wxiA 275 30.55 c.26.2.1 121400 1gdhA 320 31.55 c.2.1.4,c.23.12.1 30095,31355 2a2cA 478 32.40 2fuvA 549 32.70 2fssA 365 33.72 2e7jA 371 34.04 1uk8A 282 34.31 c.69.1.10 107907 1m3sA 186 35.90 c.80.1.3 78573 2yvaA 196 36.59 1x92A 199 37.60 c.80.1.3 114976 2pocA 367 38.37 2rjoA 332 38.52 1o4sA 389 39.15 c.67.1.1 86620 1khtA 192 39.59 c.37.1.1 84401 2pg9A 337 40.32 2bwnA 401 40.70 c.67.1.4 129368 1e5dA 402 41.29 c.23.5.1,d.157.1.3 31208,42061 2a3nA 355 41.68 1m22A 503 41.93 c.117.1.1 78464 2hfsA 332 43.37 1o0wA 252 45.39 a.149.1.1,d.50.1.1 80751,80752 1poxA 585 45.62 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1jyeA 349 46.03 c.93.1.1 67455 2hufA 393 46.41 1wcwA 261 46.99 2qmqA 286 47.24 1qtrA 317 47.51 c.69.1.7 34660 1rzuA 485 47.75 c.87.1.8 105140 1qdeA 224 48.01 c.37.1.19 32410 1surA 215 48.24 c.26.2.2 31620 2ay1A 394 48.50 c.67.1.1 34357 2i2wA 212 49.13 1pswA 348 49.87 c.87.1.7 88287 8abpA 306 50.36 c.93.1.1 35647 1jx6A 342 52.29 c.93.1.1 67406 2pgnA 589 52.35 1eg5A 384 52.63 c.67.1.3 34429 2nlyA 245 52.67 c.6.2.7 138364 1c4xA 285 54.09 c.69.1.10 34684 2r2nA 425 55.43 1t3gA 159 55.82 1eluA 390 56.08 c.67.1.3 34434 2fq6A 415 56.91 c.67.1.3 133939 1a04A 215 57.74 a.4.6.2,c.23.1.1 16234,31089 1kmkA 406 57.79 c.67.1.3 68696 1fnsA 196 57.92 c.62.1.1 34136 1q0qA 406 58.25 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2brxA 244 58.37 c.73.1.3 129028 2cb0A 333 59.05 1gpjA 404 60.73 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 3beoA 375 60.90 1mtzA 293 61.15 c.69.1.7 79467 1q6zA 528 61.47 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2p1zA 180 61.95 3tmkA 216 62.06 c.37.1.1 31920 1wwkA 307 62.28 2px6A 316 63.55 1owlA 484 65.47 a.99.1.1,c.28.1.1 93647,93648 1npyA 271 65.64 c.2.1.7,c.58.1.5 85995,85996 2ac2A 309 66.15 1elqA 390 67.16 c.67.1.3 34436 2infA 359 68.64 2qwwA 154 69.49 2z9wA 392 70.02 1p3wA 404 71.45 c.67.1.3 87752 1y37A 304 72.66 1u08A 386 74.24 c.67.1.1 107543 1gdeA 389 75.23 c.67.1.1 60456 1r3dA 264 76.11 c.69.1.35 111680 2akoA 251 76.24 c.73.1.3 126923 1dxy 333 76.65 2i3dA 249 76.76 2d59A 144 77.22 c.2.1.8 131266 1vpvA 300 77.85 c.119.1.1 113975 3c6qA 311 78.24 2q71A 356 79.11 2v8pA 271 79.41 1xdwA 331 80.09 2a1fA 247 80.33 c.73.1.3 125991 1s0aA 429 82.26 c.67.1.4 98263 1womA 271 83.11 2z1mA 345 83.49 1u2eA 289 83.94 1psdA 409 85.75 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1lrv 244 86.15 2pq7A 220 86.86 2dplA 308 87.03 2b61A 377 87.83 2fyfA 398 87.90 2cwcA 303 88.53 2gcgA 330 88.78 1u5kA 244 89.06 b.40.4.13,g.45.1.2 113038,113039 1bfd 528 89.27 2jejA 358 89.38 d.240.1.1,e.8.1.7 138284,138285