# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.13e-30 c.107.1.1 68027 1ir6A 424 5.26e-29 c.107.1.2 71342 1i74A 309 7.96e-29 c.107.1.1 61867 2eb0A 307 6.71e-26 2qb7A 397 1.65e-21 1wpnA 188 4.98e-19 c.107.1.1 114826 1d2fA 390 1.433 c.67.1.3 34411 1xngA 268 1.438 c.26.2.1 122186 1rrmA 386 2.414 e.22.1.2 105081 2oq2A 261 2.580 2rgyA 290 2.682 1rzuA 485 4.181 c.87.1.8 105140 1vljA 407 4.542 e.22.1.2 108832 2gs8A 317 5.368 1ynuA 473 5.546 c.67.1.4 123762 2driA 271 5.986 c.93.1.1 35637 2fepA 289 6.325 1pieA 419 6.579 d.14.1.5,d.58.26.7 94706,94707 3cs3A 277 8.491 2dejA 350 9.080 2oi2A 292 9.425 2a2cA 478 10.91 2gt1A 326 11.09 2z06A 252 11.13 2fn9A 290 11.17 1gdeA 389 11.66 c.67.1.1 60456 2iw1A 374 11.67 c.87.1.8 137738 2q28A 564 11.88 1r7mA 235 12.05 d.95.2.1,d.95.2.1 111713,111714 8abp 306 12.30 2qu7A 288 12.56 2fuvA 549 12.92 1qs0B 338 13.09 c.36.1.7,c.48.1.2 31830,33103 1r8eA 278 13.36 a.6.1.3,d.60.1.1 104843,104844 1qtwA 285 14.46 c.1.15.1 29392 1f0kA 364 15.29 c.87.1.2 35465 2dt9A 167 15.49 1jeoA 180 16.01 c.80.1.3 66611 1eg5A 384 16.15 c.67.1.3 34429 1xp3A 307 16.70 c.1.15.1 122210 2ax4A 198 17.70 2o20A 332 17.78 1wyuA 438 18.41 c.67.1.7 121452 1vp4A 425 19.40 c.67.1.1 113935 8abpA 306 19.60 c.93.1.1 35647 1wuuA 399 19.99 d.14.1.5,d.58.26.7 114900,114901 3brsA 289 20.76 2dri 271 21.33 2ay1A 394 21.51 c.67.1.1 34357 2iksA 293 21.62 1dvjA 246 22.97 c.1.2.3 28546 1bykA 255 23.16 c.93.1.1 35706 1kqpA 271 23.24 c.26.2.1 72883 1b8gA 429 23.67 c.67.1.4 34499 1kvkA 395 24.26 d.14.1.5,d.58.26.3 73060,73061 1mtzA 293 24.34 c.69.1.7 79467 1c7nA 399 24.43 c.67.1.3 34413 3c4vA 426 24.74 3bilA 348 25.08 3beoA 375 26.41 1u5kA 244 26.83 b.40.4.13,g.45.1.2 113038,113039 2px6A 316 27.27 2c8mA 262 27.73 2yvtA 260 27.94 1b4bA 71 28.29 d.74.2.1 39718 2fvyA 309 29.05 c.93.1.1 134227 2amlA 373 29.27 1yzyA 413 29.98 c.146.1.1 124292 2hfsA 332 30.08 1wd7A 261 30.33 c.113.1.1 114526 3ctpA 330 31.31 3c0wA 235 31.36 1wy5A 317 31.47 c.26.2.5,d.229.1.1 121428,121429 2gekA 406 31.57 3brqA 296 32.08 1fnsA 196 32.53 c.62.1.1 34136 1gdhA 320 34.33 c.2.1.4,c.23.12.1 30095,31355 3tmkA 216 34.69 c.37.1.1 31920 1vimA 200 35.34 c.80.1.3 100758 2dtvA 397 35.39 2a1fA 247 35.94 c.73.1.3 125991 1x9iA 302 36.52 c.80.1.1 114997 1gudA 288 36.72 c.93.1.1 83326 1y1lA 124 37.17 c.44.1.1 116341 1e5dA 402 37.40 c.23.5.1,d.157.1.3 31208,42061 2vd8A 391 37.50 1vpvA 300 39.26 c.119.1.1 113975 2j7tA 302 40.07 1surA 215 40.48 c.26.2.2 31620 1okrA 123 40.51 a.4.5.39 93269 2e18A 257 40.82 1yw1A 442 41.63 c.1.16.4 124130 1p3wA 404 41.63 c.67.1.3 87752 1moq 368 41.74 2hufA 393 42.43 2p6pA 384 42.47 1k2yX 463 42.74 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1xhfA 123 43.30 c.23.1.1 122003 1wxiA 275 43.48 c.26.2.1 121400 2dr1A 386 43.49 2dplA 308 44.06 1k8qA 377 44.57 c.69.1.6 72177 3bf7A 255 45.27 1c4oA 664 48.84 c.37.1.19,c.37.1.19 32415,32416 1t94A 459 49.22 d.240.1.1,e.8.1.7 106701,106702 2iyfA 430 49.36 1kkhA 317 49.95 d.14.1.5,d.58.26.3 72645,72646 3c85A 183 49.95 1ve2A 235 50.04 c.90.1.1 120008 2jbwA 386 50.46 3c3kA 285 50.51 3bblA 287 50.96 1ri7A 171 51.06 a.4.5.32,d.58.4.2 97504,97505 1tlfA 301 51.63 c.93.1.1 35687 2gruA 368 51.66 1id1A 153 51.80 c.2.1.9 62286 1pda 315 52.19 2h0aA 276 54.10 1dbqA 289 54.92 c.93.1.1 35666 1dxy 333 55.73 1u08A 386 56.05 c.67.1.1 107543 1z82A 335 56.25 1jmkC 230 59.83 c.69.1.22 71747 2e85A 159 59.91 2va8A 715 60.61 2yvaA 196 60.92 1d2mA 665 61.97 c.37.1.19,c.37.1.19 32417,32418 1ko3A 230 62.96 d.157.1.1 90974 2pk3A 321 63.83 1uu1A 335 64.39 c.67.1.1 99993 1sd4A 126 65.61 a.4.5.39 105428 1t3gA 159 66.07 1bw0A 416 67.22 c.67.1.1 34385 2pocA 367 68.43 1m3sA 186 69.04 c.80.1.3 78573 1j5xA 342 69.05 c.80.1.1 71591 1lzlA 323 69.32 c.69.1.2 78306 2cyyA 151 70.14 a.4.5.32,d.58.4.2 131028,131029 2a1iA 146 71.87 c.52.1.20 125999 3chvA 284 72.29 1wcwA 261 73.27 2cb0A 333 73.51 2hkeA 380 73.73 1mgpA 313 75.15 c.119.1.1 79098 2dt8A 280 75.24 1dg9A 157 75.96 c.44.1.1 32637 1v4vA 376 77.27 c.87.1.3 100313 1kgsA 225 77.48 a.4.6.1,c.23.1.1 68596,68597 2nu8B 388 78.80 1iw0A 215 79.50 a.132.1.1 83720 1lucA 355 80.11 c.1.16.1 29547 1tibA 269 80.43 c.69.1.17 34738 2e5aA 347 80.91 1km4A 247 82.71 c.1.2.3 72740 1umdB 324 83.00 c.36.1.7,c.48.1.2 99600,99601 2cwdA 161 84.07 1u2pA 163 84.27 1uk8A 282 84.85 c.69.1.10 107907 1lc5A 364 84.92 c.67.1.1 73827 2j6iA 364 85.33 3bwxA 285 86.02 1d1qA 161 86.82 c.44.1.1 32642 1jjiA 311 86.92 c.69.1.2 66766 2psdA 318 87.86