# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.91e-29 c.107.1.1 68027 1i74A 309 6.42e-28 c.107.1.1 61867 1ir6A 424 2.84e-27 c.107.1.2 71342 2eb0A 307 3.11e-26 2qb7A 397 2.45e-20 1wpnA 188 3.51e-17 c.107.1.1 114826 1ynuA 473 1.358 c.67.1.4 123762 2rgyA 290 1.836 2fepA 289 1.922 3bblA 287 2.221 3cs3A 277 2.762 1pjqA 457 3.429 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vljA 407 4.015 e.22.1.2 108832 1gudA 288 4.433 c.93.1.1 83326 2dr1A 386 4.662 1sc6A 404 5.841 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1m32A 366 6.096 c.67.1.3 78508 2dri 271 6.466 2driA 271 6.468 c.93.1.1 35637 1rrmA 386 6.774 e.22.1.2 105081 1d3gA 367 6.810 c.1.4.1 28600 1jeoA 180 6.890 c.80.1.3 66611 1qs0B 338 7.168 c.36.1.7,c.48.1.2 31830,33103 1b8gA 429 7.195 c.67.1.4 34499 2gs8A 317 8.755 2jbwA 386 9.498 1d2fA 390 9.919 c.67.1.3 34411 1f0kA 364 10.01 c.87.1.2 35465 3c3kA 285 10.20 3brsA 289 10.81 1pieA 419 11.46 d.14.1.5,d.58.26.7 94706,94707 1wuuA 399 11.48 d.14.1.5,d.58.26.7 114900,114901 1bw0A 416 11.73 c.67.1.1 34385 1qz9A 416 12.74 c.67.1.3 96621 2dejA 350 12.85 1p5dX 463 13.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1k2yX 463 13.75 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2j6iA 364 14.43 1rzuA 485 14.55 c.87.1.8 105140 1wqaA 455 14.82 2fuvA 549 14.86 2hufA 393 15.58 2iw1A 374 16.56 c.87.1.8 137738 1m22A 503 16.89 c.117.1.1 78464 1kkhA 317 17.97 d.14.1.5,d.58.26.3 72645,72646 2ejaA 338 18.03 2gt1A 326 18.28 2oq2A 261 18.83 1vimA 200 18.90 c.80.1.3 100758 2fvyA 309 19.26 c.93.1.1 134227 1m3sA 186 19.58 c.80.1.3 78573 1ko7A 314 19.92 c.98.2.1,c.91.1.2 72797,72798 1gdhA 320 20.32 c.2.1.4,c.23.12.1 30095,31355 1dxy 333 20.72 1f0nA 285 21.18 c.69.1.3 34636 2o6yA 521 21.71 2qu7A 288 21.94 1r8eA 278 22.59 a.6.1.3,d.60.1.1 104843,104844 1iugA 352 23.41 c.67.1.3 90699 1eg5A 384 24.44 c.67.1.3 34429 2q28A 564 25.47 1tlfA 301 25.50 c.93.1.1 35687 2a2cA 478 25.59 2oi2A 292 25.99 2akoA 251 26.64 c.73.1.3 126923 1dbqA 289 26.84 c.93.1.1 35666 1o4sA 389 27.07 c.67.1.1 86620 2o20A 332 27.85 1khtA 192 27.95 c.37.1.1 84401 2jejA 358 28.01 d.240.1.1,e.8.1.7 138284,138285 1a04A 215 28.37 a.4.6.2,c.23.1.1 16234,31089 8abp 306 28.60 2a3nA 355 29.55 1wxiA 275 29.89 c.26.2.1 121400 2fssA 365 31.40 1lc5A 364 31.92 c.67.1.1 73827 2z9wA 392 32.03 3ctpA 330 32.71 2h0aA 276 33.04 1ozhA 566 34.44 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1p3wA 404 34.86 c.67.1.3 87752 2r2nA 425 35.32 1eluA 390 36.42 c.67.1.3 34434 2iksA 293 37.23 2a1fA 247 37.57 c.73.1.3 125991 2hfsA 332 38.28 2p1zA 180 38.43 1fnsA 196 40.36 c.62.1.1 34136 2c31A 568 41.47 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 3bilA 348 41.87 1psdA 409 42.45 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vjoA 393 43.43 c.67.1.3 100827 1j5xA 342 44.17 c.80.1.1 71591 2fn9A 290 44.37 1mgpA 313 45.44 c.119.1.1 79098 3tmkA 216 45.56 c.37.1.1 31920 1t3gA 159 45.98 1qmgA 524 46.28 a.100.1.2,c.2.1.6 18785,30182 1x92A 199 46.40 c.80.1.3 114976 3beoA 375 46.87 1lrv 244 47.04 1vp4A 425 47.42 c.67.1.1 113935 1xdwA 331 47.47 2z1yA 397 48.08 2rjoA 332 48.69 1xngA 268 48.84 c.26.2.1 122186 1sd4A 126 49.02 a.4.5.39 105428 1wd7A 261 49.16 c.113.1.1 114526 1wwkA 307 49.20 1uk8A 282 49.75 c.69.1.10 107907 2gcgA 330 50.04 1x9iA 302 50.36 c.80.1.1 114997 1kmkA 406 50.39 c.67.1.3 68696 1vpvA 300 50.40 c.119.1.1 113975 2bwnA 401 50.52 c.67.1.4 129368 1c7nA 399 52.36 c.67.1.3 34413 1jg8A 347 52.57 c.67.1.1 62946 2ioyA 283 53.75 1gca 309 54.55 1gpjA 404 55.22 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2infA 359 55.51 2d0iA 333 56.38 1jftA 340 56.43 a.35.1.5,c.93.1.1 66652,66653 1yaaA 412 56.48 c.67.1.1 34280 1u6zA 513 56.98 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2z20A 432 57.54 1gdeA 389 58.47 c.67.1.1 60456 1b4bA 71 58.58 d.74.2.1 39718 3brqA 296 58.61 1m6sA 347 59.05 c.67.1.1 78701 2qs7A 144 59.09 2qwwA 154 59.80 1surA 215 60.43 c.26.2.2 31620 1wyuA 438 61.38 c.67.1.7 121452 1fwkA 296 63.32 d.14.1.5,d.58.26.1 37576,39398 1r7mA 235 63.74 d.95.2.1,d.95.2.1 111713,111714 1bykA 255 63.86 c.93.1.1 35706 2nlyA 245 64.03 c.6.2.7 138364 1kxuA 333 65.83 a.74.1.1,a.74.1.1 18358,18359 1bjwA 382 65.87 c.67.1.1 34349 1q0qA 406 66.31 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1ukfA 188 66.43 d.3.1.10 99488 2p10A 286 67.43 2o1eA 312 68.52 1np3A 338 70.24 a.100.1.2,c.2.1.6 85946,85947 2dplA 308 70.42 1byiA 224 70.62 c.37.1.10 32199 2e7jA 371 70.95 1js3A 486 71.40 c.67.1.6 67215 1yw1A 442 71.64 c.1.16.4 124130 1q6zA 528 71.66 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 3cogA 403 71.78 1wcwA 261 72.08 2oq1A 254 72.15 d.93.1.1,d.93.1.1 139220,139221 3bueA 79 72.59 2gekA 406 73.83 2i2wA 212 74.38 2ay1A 394 74.68 c.67.1.1 34357 1y2mA 716 74.87 1h72C 296 76.63 d.14.1.5,d.58.26.1 60712,60713 2fhxA 246 76.96 1mx3A 347 78.32 c.2.1.4,c.23.12.1 79638,79639 1wstA 417 78.43 c.67.1.1 121244 1wyuB 474 80.13 c.67.1.7 121453 1vpdA 299 80.31 a.100.1.1,c.2.1.6 113951,113952 1ve2A 235 80.62 c.90.1.1 120008 1e5dA 402 81.41 c.23.5.1,d.157.1.3 31208,42061 1zunA 325 81.76 c.26.2.2 125676 2pq7A 220 82.49 1m65A 245 82.68 c.6.3.1 84847 1u08A 386 83.09 c.67.1.1 107543 2f7lA 455 84.59 1m7yA 435 84.95 c.67.1.4 78761 1elqA 390 85.54 c.67.1.3 34436 2g76A 335 87.04 2df8A 325 87.25 1c4xA 285 87.35 c.69.1.10 34684 1k47A 337 88.80 d.14.1.5,d.58.26.4 72040,72041 1pmmA 466 89.06 c.67.1.6 94901 1pswA 348 89.43 c.87.1.7 88287