# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.55e-28 c.107.1.1 68027 1i74A 309 1.67e-26 c.107.1.1 61867 1ir6A 424 4.35e-26 c.107.1.2 71342 2eb0A 307 7.48e-25 2qb7A 397 1.58e-19 1wpnA 188 2.27e-16 c.107.1.1 114826 2rgyA 290 1.677 1ynuA 473 1.969 c.67.1.4 123762 2fepA 289 2.169 3cs3A 277 2.598 3bblA 287 2.965 1qz9A 416 3.963 c.67.1.3 96621 2driA 271 4.025 c.93.1.1 35637 1vljA 407 4.301 e.22.1.2 108832 1pjqA 457 4.315 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2dri 271 4.584 1rrmA 386 4.808 e.22.1.2 105081 1gudA 288 5.040 c.93.1.1 83326 1jeoA 180 5.174 c.80.1.3 66611 1m32A 366 6.630 c.67.1.3 78508 1d3gA 367 6.690 c.1.4.1 28600 3brsA 289 7.225 1qs0B 338 7.606 c.36.1.7,c.48.1.2 31830,33103 1sc6A 404 8.088 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2dr1A 386 8.238 2oq2A 261 8.517 2j6iA 364 8.908 1d2fA 390 8.948 c.67.1.3 34411 3c3kA 285 9.621 1wqaA 455 9.628 2q28A 564 9.876 1b8gA 429 10.36 c.67.1.4 34499 2jbwA 386 10.60 1bw0A 416 11.94 c.67.1.1 34385 1f0kA 364 12.25 c.87.1.2 35465 1p5dX 463 14.02 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fssA 365 14.89 1k2yX 463 15.00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2iksA 293 15.11 1wxiA 275 15.21 c.26.2.1 121400 2gs8A 317 15.34 3ctpA 330 15.57 1ko7A 314 16.15 c.98.2.1,c.91.1.2 72797,72798 2fvyA 309 16.26 c.93.1.1 134227 2iw1A 374 18.01 c.87.1.8 137738 1rzuA 485 18.26 c.87.1.8 105140 1vimA 200 19.12 c.80.1.3 100758 2dejA 350 19.25 1r8eA 278 19.36 a.6.1.3,d.60.1.1 104843,104844 1m22A 503 20.17 c.117.1.1 78464 2qu7A 288 20.18 2fuvA 549 20.93 1m3sA 186 21.39 c.80.1.3 78573 1ozhA 566 21.51 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2fn9A 290 22.42 1dxy 333 22.57 1wuuA 399 23.08 d.14.1.5,d.58.26.7 114900,114901 1f0nA 285 24.34 c.69.1.3 34636 2c31A 568 24.38 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1gdhA 320 24.91 c.2.1.4,c.23.12.1 30095,31355 1eg5A 384 25.47 c.67.1.3 34429 1tlfA 301 25.94 c.93.1.1 35687 1lc5A 364 27.28 c.67.1.1 73827 1p3wA 404 27.81 c.67.1.3 87752 2hufA 393 29.67 1uk8A 282 29.81 c.69.1.10 107907 2gt1A 326 31.11 2a3nA 355 31.34 8abp 306 31.73 1dbqA 289 31.96 c.93.1.1 35666 2o6yA 521 31.96 1o4sA 389 32.35 c.67.1.1 86620 2o20A 332 32.57 2dplA 308 33.48 1surA 215 33.92 c.26.2.2 31620 2z9wA 392 34.35 2ioyA 283 35.03 1q6zA 528 35.08 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1c7nA 399 36.97 c.67.1.3 34413 1eluA 390 37.18 c.67.1.3 34434 1wyuA 438 37.34 c.67.1.7 121452 1psdA 409 37.51 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2h0aA 276 37.58 1x92A 199 38.86 c.80.1.3 114976 1vpvA 300 38.98 c.119.1.1 113975 2rjoA 332 39.40 2oi2A 292 39.64 3bilA 348 41.10 1kkhA 317 41.57 d.14.1.5,d.58.26.3 72645,72646 1pieA 419 42.03 d.14.1.5,d.58.26.7 94706,94707 1vp4A 425 42.15 c.67.1.1 113935 2a2cA 478 42.33 1khtA 192 42.84 c.37.1.1 84401 1xdwA 331 43.91 2akoA 251 44.48 c.73.1.3 126923 1kmkA 406 44.58 c.67.1.3 68696 1lrv 244 45.00 1gca 309 45.08 1iugA 352 45.51 c.67.1.3 90699 1jftA 340 45.96 a.35.1.5,c.93.1.1 66652,66653 1js3A 486 46.04 c.67.1.6 67215 2bwnA 401 48.41 c.67.1.4 129368 1xngA 268 48.56 c.26.2.1 122186 1gdeA 389 48.92 c.67.1.1 60456 1wwkA 307 49.01 2gcgA 330 49.07 1bykA 255 49.39 c.93.1.1 35706 1gpjA 404 50.83 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1poxA 585 51.52 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1t3gA 159 52.99 3cogA 403 53.40 2r2nA 425 53.78 1ve2A 235 54.01 c.90.1.1 120008 1u08A 386 54.36 c.67.1.1 107543 2qwwA 154 54.75 1c4xA 285 54.76 c.69.1.10 34684 3brqA 296 54.95 2dgmA 466 57.04 c.67.1.6 131508 1yaaA 412 58.54 c.67.1.1 34280 1j5xA 342 59.40 c.80.1.1 71591 1o0wA 252 59.78 a.149.1.1,d.50.1.1 80751,80752 2a1fA 247 60.86 c.73.1.3 125991 2hfsA 332 60.92 1sd4A 126 62.14 a.4.5.39 105428 2d0iA 333 62.83 1bn7A 294 63.79 c.69.1.8 34677 1a04A 215 64.21 a.4.6.2,c.23.1.1 16234,31089 2fyfA 398 64.22 3tmkA 216 64.28 c.37.1.1 31920 2o1eA 312 65.07 2jejA 358 66.35 d.240.1.1,e.8.1.7 138284,138285 1dvjA 246 67.23 c.1.2.3 28546 2ay1A 394 67.25 c.67.1.1 34357 1u6zA 513 68.31 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1e5dA 402 69.27 c.23.5.1,d.157.1.3 31208,42061 1vjoA 393 69.31 c.67.1.3 100827 2p10A 286 69.35 1jyeA 349 69.55 c.93.1.1 67455 1mgpA 313 69.58 c.119.1.1 79098 2yvaA 196 69.71 1b4bA 71 69.74 d.74.2.1 39718 2z1yA 397 69.79 1qmgA 524 70.06 a.100.1.2,c.2.1.6 18785,30182 1fnsA 196 70.18 c.62.1.1 34136 2nacA 393 70.50 c.2.1.4,c.23.12.1 30088,31348 2p1zA 180 71.09 3beoA 375 72.62 1mtzA 293 73.58 c.69.1.7 79467 2gekA 406 74.60 2infA 359 74.75 1oi7A 288 76.29 c.2.1.8,c.23.4.1 87049,87050 2i2wA 212 76.41 2nlyA 245 77.52 c.6.2.7 138364 2e7jA 371 79.35 1tibA 269 80.04 c.69.1.17 34738 1m7yA 435 80.06 c.67.1.4 78761 1wd7A 261 80.11 c.113.1.1 114526 1wyuB 474 80.31 c.67.1.7 121453 2z20A 432 80.33 1jg8A 347 80.44 c.67.1.1 62946 2oq1A 254 81.37 d.93.1.1,d.93.1.1 139220,139221 1q0qA 406 81.40 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1bjwA 382 81.59 c.67.1.1 34349 2ejaA 338 81.97 1x9iA 302 84.05 c.80.1.1 114997 2pq7A 220 84.73 1m6sA 347 84.74 c.67.1.1 78701 1kxuA 333 85.44 a.74.1.1,a.74.1.1 18358,18359 1zd1A 284 85.88 1bfd 528 86.80 1np3A 338 87.66 a.100.1.2,c.2.1.6 85946,85947 1zclA 180 87.85 1mx3A 347 87.85 c.2.1.4,c.23.12.1 79638,79639 1cs1A 386 87.89 c.67.1.3 34399 1sur 215 88.06 2uz1A 563 89.08