# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.38e-28 c.107.1.1 68027 1i74A 309 1.74e-26 c.107.1.1 61867 1ir6A 424 3.69e-26 c.107.1.2 71342 2eb0A 307 5.77e-25 2qb7A 397 1.50e-19 1wpnA 188 4.98e-16 c.107.1.1 114826 1d2fA 390 1.086 c.67.1.3 34411 1ynuA 473 2.277 c.67.1.4 123762 1b8gA 429 3.212 c.67.1.4 34499 2rgyA 290 3.347 3cs3A 277 3.514 1rrmA 386 4.360 e.22.1.2 105081 1m32A 366 5.185 c.67.1.3 78508 1vljA 407 5.415 e.22.1.2 108832 2driA 271 5.584 c.93.1.1 35637 2dri 271 6.173 2j6iA 364 6.275 3bblA 287 7.259 2gs8A 317 8.624 2oq2A 261 9.477 2fepA 289 9.96 2fssA 365 10.48 1kmkA 406 11.14 c.67.1.3 68696 1gudA 288 11.94 c.93.1.1 83326 2dr1A 386 12.00 2c31A 568 12.47 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1wuuA 399 12.59 d.14.1.5,d.58.26.7 114900,114901 1qz9A 416 13.62 c.67.1.3 96621 2iksA 293 13.87 1rzuA 485 14.46 c.87.1.8 105140 1surA 215 14.77 c.26.2.2 31620 3brsA 289 16.06 1uk8A 282 16.27 c.69.1.10 107907 3c3kA 285 16.59 1owlA 484 17.24 a.99.1.1,c.28.1.1 93647,93648 2jejA 358 18.32 d.240.1.1,e.8.1.7 138284,138285 1ko7A 314 18.43 c.98.2.1,c.91.1.2 72797,72798 1p3wA 404 18.46 c.67.1.3 87752 2z9wA 392 18.73 1sc6A 404 19.20 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qs0B 338 19.58 c.36.1.7,c.48.1.2 31830,33103 2bwnA 401 20.94 c.67.1.4 129368 1jeoA 180 22.50 c.80.1.3 66611 1wqaA 455 24.30 1c4xA 285 24.32 c.69.1.10 34684 1s0aA 429 25.85 c.67.1.4 98263 2jbwA 386 26.51 2q28A 564 26.61 1y37A 304 26.87 1qmgA 524 27.07 a.100.1.2,c.2.1.6 18785,30182 1f0nA 285 27.55 c.69.1.3 34636 1tlfA 301 28.59 c.93.1.1 35687 1bw0A 416 29.37 c.67.1.1 34385 2fyfA 398 30.26 1qtrA 317 30.72 c.69.1.7 34660 1c7nA 399 30.90 c.67.1.3 34413 1dbqA 289 31.05 c.93.1.1 35666 1pjqA 457 31.09 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2oi2A 292 31.16 1kkhA 317 31.91 d.14.1.5,d.58.26.3 72645,72646 1m7yA 435 32.18 c.67.1.4 78761 2dejA 350 32.31 1psdA 409 32.54 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1eluA 390 32.56 c.67.1.3 34434 1d3gA 367 32.59 c.1.4.1 28600 1lzlA 323 33.80 c.69.1.2 78306 2dplA 308 34.36 2hkeA 380 35.17 3ctpA 330 35.81 1wyuB 474 35.86 c.67.1.7 121453 1m33A 258 35.95 c.69.1.26 78514 2fn9A 290 36.08 2dgmA 466 36.87 c.67.1.6 131508 2o6yA 521 37.14 1bn7A 294 37.21 c.69.1.8 34677 2qryA 330 38.29 2h0aA 276 38.59 1u08A 386 38.84 c.67.1.1 107543 1ozhA 566 39.09 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1e5dA 402 39.35 c.23.5.1,d.157.1.3 31208,42061 2a2cA 478 40.26 2qu7A 288 41.83 2nacA 393 41.84 c.2.1.4,c.23.12.1 30088,31348 2pocA 367 43.12 1pmmA 466 43.20 c.67.1.6 94901 1gdhA 320 43.29 c.2.1.4,c.23.12.1 30095,31355 1gpjA 404 43.46 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2hufA 393 43.71 2o20A 332 43.94 1xdwA 331 44.38 1ko3A 230 45.58 d.157.1.1 90974 1elqA 390 46.01 c.67.1.3 34436 1x9iA 302 46.49 c.80.1.1 114997 8abp 306 47.39 1mtzA 293 47.63 c.69.1.7 79467 1snyA 267 48.87 c.2.1.2 105833 2i7vA 459 49.24 1fwkA 296 50.35 d.14.1.5,d.58.26.1 37576,39398 1u2eA 289 50.59 1zd1A 284 51.05 1cs1A 386 52.81 c.67.1.3 34399 1ukfA 188 52.89 d.3.1.10 99488 2pk3A 321 53.22 2hm7A 310 54.10 1o4sA 389 54.64 c.67.1.1 86620 1moqA 368 54.66 c.80.1.1 35302 2nlyA 245 55.98 c.6.2.7 138364 1js3A 486 57.65 c.67.1.6 67215 2e9xC 219 57.91 2hfsA 332 58.77 1eg5A 384 59.13 c.67.1.3 34429 2h2zA 306 59.43 1bia 321 59.54 1jftA 340 59.61 a.35.1.5,c.93.1.1 66652,66653 1m22A 503 59.70 c.117.1.1 78464 1wyuA 438 59.97 c.67.1.7 121452 1a88A 275 60.00 c.69.1.12 34707 1lc5A 364 60.07 c.67.1.1 73827 1qj5A 429 61.10 c.67.1.4 34493 2bklA 695 61.28 1dxy 333 61.94 1p5dX 463 62.20 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2gcgA 330 62.25 2o1eA 312 63.43 1r8eA 278 64.40 a.6.1.3,d.60.1.1 104843,104844 1xklA 273 64.50 c.69.1.20 115410 2o2gA 223 65.51 1iugA 352 65.67 c.67.1.3 90699 3brqA 296 65.82 1vpdA 299 65.97 a.100.1.1,c.2.1.6 113951,113952 1cl1A 395 66.87 c.67.1.3 34395 1wm1A 317 67.05 c.69.1.7 109405 1n4aA 252 68.15 c.92.2.2 85317 1bykA 255 68.28 c.93.1.1 35706 1y2mA 716 68.69 2ioyA 283 69.44 1vimA 200 70.83 c.80.1.3 100758 1pieA 419 71.13 d.14.1.5,d.58.26.7 94706,94707 1k2yX 463 71.16 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1gdeA 389 72.11 c.67.1.1 60456 1t94A 459 72.59 d.240.1.1,e.8.1.7 106701,106702 2ay1A 394 73.67 c.67.1.1 34357 2gt1A 326 73.75 1qdeA 224 74.21 c.37.1.19 32410 1k47A 337 74.40 d.14.1.5,d.58.26.4 72040,72041 1ibjA 464 74.68 c.67.1.3 62162 1aquA 297 74.94 c.37.1.5 31942 1u4nA 310 75.34 c.69.1.2 113021 1t8tA 271 76.38 c.37.1.5 106685 2dkb 433 76.92 2p1zA 180 76.99 2iuyA 342 79.50 2fvyA 309 79.98 c.93.1.1 134227 1q6zA 528 80.72 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1zclA 180 81.39 1t3gA 159 81.83 1ri7A 171 83.32 a.4.5.32,d.58.4.2 97504,97505 3beoA 375 84.75 1wwkA 307 85.34 1yzyA 413 85.81 c.146.1.1 124292 2r2nA 425 86.74 1sur 215 86.89 3b55A 451 87.32 1pot 325 88.00 1jjiA 311 88.11 c.69.1.2 66766 1jyeA 349 89.34 c.93.1.1 67455 2i7gA 376 89.68