# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.58e-27 c.107.1.1 68027 1i74A 309 1.70e-25 c.107.1.1 61867 1ir6A 424 2.55e-25 c.107.1.2 71342 2eb0A 307 4.91e-24 2qb7A 397 1.50e-18 1wpnA 188 2.66e-16 c.107.1.1 114826 1d2fA 390 0.9506 c.67.1.3 34411 3cs3A 277 1.404 2rgyA 290 1.511 1rrmA 386 2.009 e.22.1.2 105081 1ynuA 473 3.108 c.67.1.4 123762 2fepA 289 3.129 3bblA 287 3.402 2gs8A 317 3.451 2dr1A 386 4.335 2driA 271 4.484 c.93.1.1 35637 1vljA 407 4.775 e.22.1.2 108832 1b8gA 429 4.822 c.67.1.4 34499 2dri 271 5.803 1gudA 288 6.405 c.93.1.1 83326 2j6iA 364 6.838 2dejA 350 7.212 2oq2A 261 7.667 1pieA 419 9.095 d.14.1.5,d.58.26.7 94706,94707 3c3kA 285 9.436 1m32A 366 9.602 c.67.1.3 78508 1d3gA 367 9.869 c.1.4.1 28600 1bw0A 416 10.14 c.67.1.1 34385 1jeoA 180 10.21 c.80.1.3 66611 2gt1A 326 10.89 1wuuA 399 11.19 d.14.1.5,d.58.26.7 114900,114901 3brsA 289 11.20 1pjqA 457 11.79 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1sc6A 404 12.49 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o20A 332 13.55 1rzuA 485 13.78 c.87.1.8 105140 1qs0B 338 14.35 c.36.1.7,c.48.1.2 31830,33103 2fvyA 309 15.01 c.93.1.1 134227 2iw1A 374 15.05 c.87.1.8 137738 2fssA 365 15.73 2a2cA 478 16.69 1f0nA 285 16.88 c.69.1.3 34636 1surA 215 17.22 c.26.2.2 31620 1iugA 352 17.94 c.67.1.3 90699 2fn9A 290 18.08 2jbwA 386 18.23 2iksA 293 18.57 1qmgA 524 19.48 a.100.1.2,c.2.1.6 18785,30182 1kkhA 317 20.07 d.14.1.5,d.58.26.3 72645,72646 2oi2A 292 20.27 2bwnA 401 21.86 c.67.1.4 129368 1gpjA 404 21.86 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1vimA 200 22.74 c.80.1.3 100758 1c7nA 399 23.01 c.67.1.3 34413 1u08A 386 23.68 c.67.1.1 107543 1gca 309 24.03 1m22A 503 24.12 c.117.1.1 78464 2q28A 564 24.59 2c31A 568 24.91 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1y2mA 716 24.93 3ctpA 330 25.19 1m3sA 186 25.98 c.80.1.3 78573 3brqA 296 26.04 2e87A 357 26.25 1vjoA 393 26.99 c.67.1.3 100827 1c4xA 285 28.65 c.69.1.10 34684 2z9wA 392 28.97 2qu7A 288 30.86 1fx7A 230 31.27 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qz9A 416 31.56 c.67.1.3 96621 3c4vA 426 32.82 2ioyA 283 33.18 3bilA 348 34.30 1gdeA 389 34.72 c.67.1.1 60456 1o4sA 389 35.32 c.67.1.1 86620 1f0kA 364 35.61 c.87.1.2 35465 1vpdA 299 35.67 a.100.1.1,c.2.1.6 113951,113952 1dbqA 289 35.87 c.93.1.1 35666 2jejA 358 36.00 d.240.1.1,e.8.1.7 138284,138285 1s3jA 155 36.25 a.4.5.28 98437 1tlfA 301 37.59 c.93.1.1 35687 2hkeA 380 37.84 1m7yA 435 38.02 c.67.1.4 78761 1moqA 368 38.04 c.80.1.1 35302 1uk8A 282 38.90 c.69.1.10 107907 1ko7A 314 39.08 c.98.2.1,c.91.1.2 72797,72798 1zunA 325 39.21 c.26.2.2 125676 2pg9A 337 39.66 8abp 306 40.82 2h0aA 276 41.60 1wyuA 438 41.78 c.67.1.7 121452 2ewsA 287 42.77 1pmmA 466 43.60 c.67.1.6 94901 2d0iA 333 44.01 1fwkA 296 44.79 d.14.1.5,d.58.26.1 37576,39398 1bykA 255 44.95 c.93.1.1 35706 2o6yA 521 45.39 1p3wA 404 45.81 c.67.1.3 87752 1k47A 337 46.36 d.14.1.5,d.58.26.4 72040,72041 2e7xA 150 46.37 1jftA 340 46.74 a.35.1.5,c.93.1.1 66652,66653 2r2nA 425 47.75 1wwkA 307 48.04 2hufA 393 48.41 1wqaA 455 48.44 3cogA 403 49.17 1lucA 355 49.43 c.1.16.1 29547 1xdwA 331 51.76 2bfdA 400 51.99 2hfsA 332 52.83 2pn6A 150 54.12 1mtzA 293 54.24 c.69.1.7 79467 1e5dA 402 55.54 c.23.5.1,d.157.1.3 31208,42061 1r8eA 278 56.78 a.6.1.3,d.60.1.1 104843,104844 3tmkA 216 57.52 c.37.1.1 31920 1t94A 459 58.05 d.240.1.1,e.8.1.7 106701,106702 1y37A 304 58.09 2pq7A 220 59.42 2ay1A 394 59.48 c.67.1.1 34357 1m6sA 347 62.03 c.67.1.1 78701 1psdA 409 62.30 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1jyeA 349 62.52 c.93.1.1 67455 1x9iA 302 62.64 c.80.1.1 114997 1zclA 180 62.93 1lc5A 364 62.96 c.67.1.1 73827 2a3nA 355 63.47 1u6zA 513 63.49 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2pocA 367 63.56 1ukfA 188 63.79 d.3.1.10 99488 2ejaA 338 64.05 2ac2A 309 65.20 1ozhA 566 65.68 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2r0bA 154 65.73 3beoA 375 65.85 1jg8A 347 66.07 c.67.1.1 62946 2vojA 371 67.67 2e9xC 219 67.81 1qdeA 224 68.85 c.37.1.19 32410 1eg5A 384 69.50 c.67.1.3 34429 2o7cA 398 70.01 1wyuB 474 71.22 c.67.1.7 121453 1qtrA 317 71.26 c.69.1.7 34660 1ri7A 171 71.95 a.4.5.32,d.58.4.2 97504,97505 1j32A 388 72.58 c.67.1.1 77067 1cl1A 395 72.63 c.67.1.3 34395 1lj9A 144 72.67 a.4.5.28 78035 1kvkA 395 73.01 d.14.1.5,d.58.26.3 73060,73061 1khtA 192 73.04 c.37.1.1 84401 1kmkA 406 73.71 c.67.1.3 68696 2cb0A 333 74.13 2o1sA 621 74.16 2p1zA 180 74.91 2ax4A 198 78.03 1bjwA 382 78.96 c.67.1.1 34349 1p5dX 463 79.30 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2qghA 425 79.54 2pk3A 321 80.44 2e7jA 371 82.55 2qwwA 154 82.57 1pswA 348 83.33 c.87.1.7 88287 1bn7A 294 83.41 c.69.1.8 34677 1xi9A 406 83.56 c.67.1.1 115355 1a04A 215 84.29 a.4.6.2,c.23.1.1 16234,31089 1q0qA 406 84.70 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2dplA 308 86.71 1sur 215 88.78 1sd4A 126 88.96 a.4.5.39 105428 1ibjA 464 89.06 c.67.1.3 62162 1r7mA 235 89.23 d.95.2.1,d.95.2.1 111713,111714 1yaaA 412 89.27 c.67.1.1 34280 1xngA 268 89.54 c.26.2.1 122186 3b55A 451 89.59