# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 6.80e-29 c.107.1.1 68027 1i74A 309 3.75e-27 c.107.1.1 61867 1ir6A 424 4.59e-27 c.107.1.2 71342 2eb0A 307 1.15e-25 2qb7A 397 1.82e-19 1wpnA 188 4.12e-17 c.107.1.1 114826 1d2fA 390 1.301 c.67.1.3 34411 3cs3A 277 1.369 2rgyA 290 1.955 1rrmA 386 2.084 e.22.1.2 105081 1ynuA 473 2.765 c.67.1.4 123762 2driA 271 4.244 c.93.1.1 35637 1vljA 407 4.591 e.22.1.2 108832 3bblA 287 5.058 1sc6A 404 5.416 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2dri 271 5.626 1gudA 288 5.851 c.93.1.1 83326 2gs8A 317 5.879 1pieA 419 6.151 d.14.1.5,d.58.26.7 94706,94707 2dejA 350 6.214 1b8gA 429 6.508 c.67.1.4 34499 1bw0A 416 7.081 c.67.1.1 34385 2fepA 289 7.467 2j6iA 364 7.670 1pjqA 457 8.406 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 3c3kA 285 8.422 1f0nA 285 9.344 c.69.1.3 34636 2iksA 293 9.679 2oq2A 261 9.834 3brsA 289 10.55 1jeoA 180 10.56 c.80.1.3 66611 1surA 215 12.16 c.26.2.2 31620 2fssA 365 12.52 2bwnA 401 12.92 c.67.1.4 129368 1wuuA 399 13.45 d.14.1.5,d.58.26.7 114900,114901 1qs0B 338 13.47 c.36.1.7,c.48.1.2 31830,33103 1d3gA 367 14.36 c.1.4.1 28600 2fvyA 309 14.83 c.93.1.1 134227 1m32A 366 14.94 c.67.1.3 78508 1ko7A 314 15.04 c.98.2.1,c.91.1.2 72797,72798 2dr1A 386 15.34 1m22A 503 15.39 c.117.1.1 78464 2fn9A 290 15.57 2d0iA 333 16.12 2a2cA 478 17.10 1qz9A 416 17.69 c.67.1.3 96621 2jbwA 386 18.08 2ejaA 338 18.17 1qmgA 524 18.72 a.100.1.2,c.2.1.6 18785,30182 2q28A 564 19.85 1kkhA 317 19.99 d.14.1.5,d.58.26.3 72645,72646 1c7nA 399 20.05 c.67.1.3 34413 1gpjA 404 20.23 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1gca 309 22.26 2gt1A 326 22.84 1uk8A 282 23.04 c.69.1.10 107907 8abp 306 23.17 2h0aA 276 23.29 1psdA 409 24.52 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1wyuA 438 25.37 c.67.1.7 121452 3ctpA 330 27.66 1kmkA 406 27.96 c.67.1.3 68696 1vimA 200 28.29 c.80.1.3 100758 2pg9A 337 29.95 1m3sA 186 30.05 c.80.1.3 78573 1o4sA 389 30.37 c.67.1.1 86620 1f0kA 364 30.87 c.87.1.2 35465 1dbqA 289 31.20 c.93.1.1 35666 2o20A 332 31.22 1qtrA 317 31.37 c.69.1.7 34660 2ioyA 283 31.69 2oi2A 292 31.77 1u08A 386 31.79 c.67.1.1 107543 1c4xA 285 32.24 c.69.1.10 34684 1rzuA 485 33.03 c.87.1.8 105140 1tlfA 301 33.64 c.93.1.1 35687 1n4aA 252 34.63 c.92.2.2 85317 1eg5A 384 34.86 c.67.1.3 34429 1s3jA 155 35.17 a.4.5.28 98437 1iugA 352 35.52 c.67.1.3 90699 1moqA 368 35.89 c.80.1.1 35302 2c31A 568 36.34 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 3brqA 296 36.81 2qu7A 288 37.57 1gdeA 389 38.39 c.67.1.1 60456 2fq6A 415 39.34 c.67.1.3 133939 2jejA 358 40.00 d.240.1.1,e.8.1.7 138284,138285 1t94A 459 40.81 d.240.1.1,e.8.1.7 106701,106702 1p3wA 404 41.80 c.67.1.3 87752 1u6zA 513 41.82 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1vpdA 299 41.84 a.100.1.1,c.2.1.6 113951,113952 1wwkA 307 41.87 2pq7A 220 41.95 3c4vA 426 42.79 2hfsA 332 43.93 2e87A 357 44.08 1wd7A 261 45.07 c.113.1.1 114526 1e5dA 402 45.16 c.23.5.1,d.157.1.3 31208,42061 1zclA 180 45.23 1ri7A 171 45.74 a.4.5.32,d.58.4.2 97504,97505 1vjoA 393 46.28 c.67.1.3 100827 1x9iA 302 47.29 c.80.1.1 114997 2o1eA 312 47.29 1bykA 255 47.95 c.93.1.1 35706 2hkeA 380 48.25 2z9wA 392 48.60 1zunA 325 48.83 c.26.2.2 125676 1uu1A 335 49.20 c.67.1.1 99993 2r2nA 425 49.41 2o6yA 521 50.99 2akoA 251 51.35 c.73.1.3 126923 1wqaA 455 52.84 2ewsA 287 52.87 1u2eA 289 52.97 2bfdA 400 53.36 1vpvA 300 53.41 c.119.1.1 113975 2e9xC 219 53.44 1qdeA 224 54.68 c.37.1.19 32410 2ax4A 198 54.73 1pmmA 466 55.26 c.67.1.6 94901 1mgpA 313 55.71 c.119.1.1 79098 3bilA 348 55.75 1jftA 340 55.90 a.35.1.5,c.93.1.1 66652,66653 1gdhA 320 56.88 c.2.1.4,c.23.12.1 30095,31355 3tmkA 216 56.99 c.37.1.1 31920 1p5dX 463 57.44 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ve2A 235 57.81 c.90.1.1 120008 1mtzA 293 57.85 c.69.1.7 79467 1m7yA 435 57.92 c.67.1.4 78761 1ukfA 188 58.60 d.3.1.10 99488 2o2gA 223 60.22 2pjdA 343 60.67 3cogA 403 60.95 2p1zA 180 61.31 1y2mA 716 61.65 1yzyA 413 61.80 c.146.1.1 124292 2pk3A 321 62.08 1bn7A 294 62.22 c.69.1.8 34677 1dxy 333 62.41 2z20A 432 62.52 1lj9A 144 63.56 a.4.5.28 78035 2o7rA 338 64.11 2qwwA 154 64.95 1ozhA 566 65.75 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1fnsA 196 66.24 c.62.1.1 34136 1mx3A 347 66.48 c.2.1.4,c.23.12.1 79638,79639 1lc5A 364 66.64 c.67.1.1 73827 2hufA 393 66.94 1lucA 355 68.04 c.1.16.1 29547 1k2yX 463 68.34 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2hm7A 310 69.00 2dplA 308 69.15 2iw1A 374 69.82 c.87.1.8 137738 2rjoA 332 71.25 1a04A 215 71.36 a.4.6.2,c.23.1.1 16234,31089 1a88A 275 72.69 c.69.1.12 34707 1m6sA 347 72.88 c.67.1.1 78701 3beoA 375 73.43 2e7jA 371 73.51 1k47A 337 74.57 d.14.1.5,d.58.26.4 72040,72041 2i7gA 376 74.98 1y37A 304 74.99 1jg8A 347 75.20 c.67.1.1 62946 1u5kA 244 75.30 b.40.4.13,g.45.1.2 113038,113039 1zd1A 284 75.70 1kvkA 395 76.31 d.14.1.5,d.58.26.3 73060,73061 1r8eA 278 77.20 a.6.1.3,d.60.1.1 104843,104844 1jyeA 349 77.75 c.93.1.1 67455 1xdwA 331 78.61 1r7mA 235 78.90 d.95.2.1,d.95.2.1 111713,111714 2fyfA 398 80.42 1fwkA 296 80.46 d.14.1.5,d.58.26.1 37576,39398 2qryA 330 80.66 1cs1A 386 80.87 c.67.1.3 34399 2gcgA 330 80.97 2o7cA 398 81.40 2ay1A 394 81.90 c.67.1.1 34357 1sur 215 81.92 1khtA 192 82.46 c.37.1.1 84401 1q0qA 406 83.85 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2cyyA 151 84.65 a.4.5.32,d.58.4.2 131028,131029 2vojA 371 86.76 2g76A 335 87.06 2fhxA 246 87.89 1xi9A 406 88.34 c.67.1.1 115355 3b9oA 440 88.96 1dv0A 47 89.12 a.5.2.1 16289 2i3dA 249 89.22 1np3A 338 89.99 a.100.1.2,c.2.1.6 85946,85947