# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.74e-24 c.107.1.1 68027 1i74A 309 3.81e-23 c.107.1.1 61867 1ir6A 424 7.33e-23 c.107.1.2 71342 2eb0A 307 1.61e-21 2qb7A 397 6.05e-17 1wpnA 188 8.98e-15 c.107.1.1 114826 2rgyA 290 1.734 1lldA 319 3.022 c.2.1.5,d.162.1.1 30177,42144 2fepA 289 3.583 2driA 271 3.658 c.93.1.1 35637 1d2fA 390 4.053 c.67.1.3 34411 2o20A 332 4.863 2px6A 316 5.590 1qs0B 338 6.615 c.36.1.7,c.48.1.2 31830,33103 3ctpA 330 6.805 2fn9A 290 7.138 1a88A 275 8.120 c.69.1.12 34707 1ynuA 473 8.208 c.67.1.4 123762 3cs3A 277 8.576 2q28A 564 8.692 2p1zA 180 9.013 1b6g 310 9.026 2qu7A 288 9.771 2iksA 293 9.838 3bblA 287 9.929 1yzyA 413 10.32 c.146.1.1 124292 3beoA 375 10.67 2fvyA 309 10.96 c.93.1.1 134227 2c0rA 362 10.97 c.67.1.4 129604 3brqA 296 12.07 1wy5A 317 12.41 c.26.2.5,d.229.1.1 121428,121429 1rzuA 485 13.23 c.87.1.8 105140 1uxjA 309 13.40 c.2.1.5,d.162.1.1 108112,108113 2psdA 318 13.51 2dr1A 386 14.24 2dri 271 14.51 1c4xA 285 15.04 c.69.1.10 34684 1hkhA 279 15.13 c.69.1.12 90628 1vljA 407 15.13 e.22.1.2 108832 3bf7A 255 15.29 3c3kA 285 15.71 1rrmA 386 16.08 e.22.1.2 105081 1gudA 288 16.74 c.93.1.1 83326 1moq 368 17.90 1f0kA 364 18.60 c.87.1.2 35465 1pzgA 331 18.86 c.2.1.5,d.162.1.1 95425,95426 2ewdA 317 19.19 8abpA 306 20.07 c.93.1.1 35647 2fuvA 549 20.20 1xklA 273 20.60 c.69.1.20 115410 1uk8A 282 20.91 c.69.1.10 107907 1xngA 268 21.03 c.26.2.1 122186 2iw1A 374 21.05 c.87.1.8 137738 2pocA 367 21.23 1b6gA 310 21.24 c.69.1.8 34661 8abp 306 21.94 1lzlA 323 21.99 c.69.1.2 78306 2jbwA 386 22.93 1u2eA 289 23.23 3bilA 348 23.43 1t2dA 322 23.56 c.2.1.5,d.162.1.1 99084,99085 2ioyA 283 23.79 1t3iA 420 23.86 c.67.1.3 106354 1ede 310 24.53 2z06A 252 25.27 3brsA 289 25.33 2e85A 159 27.04 2pujA 286 27.28 1eg5A 384 28.63 c.67.1.3 34429 1vp4A 425 28.72 c.67.1.1 113935 1brt 277 29.34 3bchA 253 29.82 1vj7A 393 30.29 a.211.1.1,d.218.1.8 100801,100802 3bwxA 285 30.48 2df8A 325 30.49 1zoiA 276 30.78 2o2iA 300 31.43 1d2mA 665 32.06 c.37.1.19,c.37.1.19 32417,32418 2h0aA 276 32.19 1m3sA 186 33.29 c.80.1.3 78573 1b8gA 429 33.82 c.67.1.4 34499 2hufA 393 34.25 1lc5A 364 34.65 c.67.1.1 73827 3c70A 257 34.71 2qmqA 286 35.22 2jejA 358 36.85 d.240.1.1,e.8.1.7 138284,138285 6ldhA 329 37.27 c.2.1.5,d.162.1.1 30161,42128 3c85A 183 40.19 1vimA 200 40.26 c.80.1.3 100758 1va4A 279 41.59 c.69.1.12 108458 1gca 309 41.63 2ahrA 259 41.77 a.100.1.10,c.2.1.6 126775,126776 2a3nA 355 41.93 1bqbA 301 42.40 d.92.1.2 58962 1tlfA 301 42.99 c.93.1.1 35687 1a8qA 274 43.92 c.69.1.12 34702 1bykA 255 44.09 c.93.1.1 35706 1ldg 316 44.50 2hmvA 144 44.51 c.2.1.9 136615 2gekA 406 45.46 2oq2A 261 45.75 3c4vA 426 45.94 1uu1A 335 45.99 c.67.1.1 99993 1womA 271 47.63 2iuyA 342 49.33 1lucA 355 49.36 c.1.16.1 29547 1qtrA 317 50.58 c.69.1.7 34660 1w23A 360 51.65 c.67.1.4 114088 1a5zA 319 51.97 c.2.1.5,d.162.1.1 30181,42148 1p5dX 463 52.11 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1poxA 585 52.50 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1vdmA 153 52.74 c.61.1.1 119994 1hlgA 371 52.90 c.69.1.6 34656 2qvbA 297 53.13 1nriA 306 53.28 c.80.1.3 86123 1qmgA 524 53.72 a.100.1.2,c.2.1.6 18785,30182 2yvaA 196 53.93 2ay1A 394 54.21 c.67.1.1 34357 1j5xA 342 54.89 c.80.1.1 71591 2hdyA 440 55.06 1kmkA 406 55.39 c.67.1.3 68696 1qj4A 257 55.55 c.69.1.20 34796 1ni5A 433 56.71 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2rjoA 332 57.21 1ozhA 566 58.77 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1fnsA 196 60.45 c.62.1.1 34136 1gdeA 389 60.96 c.67.1.1 60456 1kl1A 419 63.41 c.67.1.4 72663 1v4vA 376 63.89 c.87.1.3 100313 1brtA 277 64.31 c.69.1.12 34699 1ur5A 309 65.41 c.2.1.5,d.162.1.1 99807,99808 1kyqA 274 66.43 c.2.1.11,e.37.1.1 73281,73282 2a22A 215 67.33 d.159.1.7 126025 1k2yX 463 67.68 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1llfA 534 69.20 c.69.1.17 78094 1evlA 401 69.61 c.51.1.1,d.104.1.1 33202,40751 1umdA 367 70.07 c.36.1.11 99599 1vi6A 208 70.11 c.23.15.1 100736 1m7yA 435 70.16 c.67.1.4 78761 2v7pA 310 72.03 1yasA 257 73.31 c.69.1.20 34801 1broA 277 73.99 c.69.1.12 34700 2z61A 370 74.80 1wxiA 275 75.09 c.26.2.1 121400 1f6dA 376 77.03 c.87.1.3 35467 1r8eA 278 77.16 a.6.1.3,d.60.1.1 104843,104844 2e5fA 325 78.09 1va0A 239 79.21 c.90.1.1 119899 2rhwA 283 80.99 1c7nA 399 81.06 c.67.1.3 34413 1a8sA 273 82.77 c.69.1.12 34710 2uxyA 341 83.76 1yw1A 442 84.05 c.1.16.4 124130 1jyeA 349 84.28 c.93.1.1 67455 2e3jA 356 86.94 1tcaA 317 87.27 c.69.1.17 34726 1tca 317 87.48 1mtzA 293 87.93 c.69.1.7 79467 1x9gA 200 88.63 c.33.1.3 109527 1xm7A 195 88.83 d.159.1.8 115473