# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ir6A 424 5.35e-10 c.107.1.2 71342 1k20A 310 3.63e-09 c.107.1.1 68027 1i74A 309 7.48e-09 c.107.1.1 61867 2eb0A 307 1.78e-07 2qb7A 397 1.15e-05 1wpnA 188 1.46e-05 c.107.1.1 114826 1iow 306 4.632 2hufA 393 5.319 1t4bA 367 5.733 c.2.1.3,d.81.1.1 106406,106407 1up7A 417 6.437 c.2.1.5,d.162.1.2 113374,113375 1sxjC 340 6.497 a.80.1.1,c.37.1.20 106085,106086 2axqA 467 6.526 1uc8A 280 6.536 c.30.1.6,d.142.1.7 99165,99166 1ygyA 529 7.863 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1eyzA 392 8.722 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1kjqA 391 9.264 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1mb4A 370 10.13 c.2.1.3,d.81.1.1 78908,78909 1k2yX 463 11.36 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1aquA 297 12.01 c.37.1.5 31942 2cmd 312 12.86 1dfoA 417 13.64 c.67.1.4 34480 1oc2A 348 14.14 c.2.1.2 92765 1v8fA 276 17.95 c.26.1.4 100503 1iowA 306 18.60 c.30.1.2,d.142.1.1 31713,41481 1p5dX 463 18.80 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2b4rO 345 19.02 c.2.1.3,d.81.1.1 127845,127846 2uuuA 584 19.06 1ihoA 283 19.06 c.26.1.4 62390 1pswA 348 19.84 c.87.1.7 88287 2cmdA 312 20.44 c.2.1.5,d.162.1.1 30135,42102 3cogA 403 21.56 3cklA 298 22.38 2dtvA 397 22.63 1jg8A 347 23.06 c.67.1.1 62946 1k3tA 359 23.35 c.2.1.3,d.81.1.1 72022,72023 1ehiA 377 23.66 c.30.1.2,d.142.1.1 31716,41484 1q1rA 431 23.66 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1ynuA 473 23.73 c.67.1.4 123762 3bh1A 507 23.81 1bj4A 470 23.81 c.67.1.4 34479 2vapA 364 23.85 1rpnA 335 24.73 c.2.1.2 97708 2z1mA 345 24.77 2r7aA 256 24.89 2i87A 364 25.65 3bfxA 296 26.50 2r6r1 338 26.91 2o7cA 398 28.16 2p4hX 322 29.48 1n2eA 300 30.39 c.26.1.4 85268 2yrxA 451 30.51 1cs1A 386 31.04 c.67.1.3 34399 1zrhA 274 31.29 1g3mA 294 31.39 c.37.1.5 83268 2z20A 432 31.43 2dwcA 433 31.95 2c81A 418 32.14 1ks9A 291 32.34 a.100.1.7,c.2.1.6 68857,68858 1m6sA 347 32.94 c.67.1.1 78701 1c7nA 399 33.02 c.67.1.3 34413 1ni5A 433 33.23 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1brmA 367 33.59 c.2.1.3,d.81.1.1 30030,39945 1qmgA 524 33.70 a.100.1.2,c.2.1.6 18785,30182 1jq5A 370 34.24 e.22.1.2 67084 1bg6A 359 34.51 a.100.1.5,c.2.1.6 18810,30214 1y8qA 346 34.80 1dv1A 449 34.92 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2dplA 308 34.98 1gsoA 431 35.40 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2gwhA 298 36.32 2g17A 337 37.18 c.2.1.3,d.81.1.1 134512,134513 1gdeA 389 37.85 c.67.1.1 60456 2dr1A 386 37.93 1t2aA 375 38.77 c.2.1.2 99078 1b8gA 429 38.89 c.67.1.4 34499 2f7lA 455 40.30 1nstA 325 40.94 c.37.1.5 31951 1v2dA 381 41.73 c.67.1.1 108281 2ewdA 317 43.49 2b69A 343 43.73 c.2.1.2 127974 2z1yA 397 43.99 2fb9A 322 45.03 1o4sA 389 46.33 c.67.1.1 86620 1t8tA 271 46.75 c.37.1.5 106685 1rv3A 483 46.90 c.67.1.4 105101 2nqtA 352 47.52 1cf2O 337 47.75 c.2.1.3,d.81.1.1 29994,39909 1irxA 523 48.38 a.97.1.2,c.26.1.1 71378,71379 1oi2A 366 50.49 c.119.1.2 103802 1m6yA 301 51.81 a.60.13.1,c.66.1.23 78716,78717 2r00A 336 51.95 2iv2X 715 52.01 b.52.2.2,c.81.1.1 137714,137715 2ew2A 316 53.71 1vkjA 285 54.23 c.37.1.5 108666 1up6A 416 54.28 c.2.1.5,d.162.1.2 107976,107977 1y4iA 398 54.97 c.67.1.3 122619 1uu1A 335 55.05 c.67.1.1 99993 1jx4A 352 55.16 d.240.1.1,e.8.1.7 90378,90379 1bs0A 384 55.57 c.67.1.4 34490 1u8fO 335 55.70 c.2.1.3,d.81.1.1 119626,119627 1vjoA 393 55.86 c.67.1.3 100827 1b7gO 340 56.56 c.2.1.3,d.81.1.1 29992,39907 1gc0A 398 58.26 c.67.1.3 70168 2pn1A 331 58.53 2q49A 359 58.81 c.2.1.3,d.81.1.1 139831,139832 1b5pA 385 59.56 c.67.1.1 90403 2imfA 203 59.75 1yw1A 442 60.52 c.1.16.4 124130 2blnA 305 61.44 b.46.1.1,c.65.1.1 128734,128735 1vqzA 341 62.32 d.224.1.3,d.104.1.3 120426,120427 1psdA 409 62.48 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1qz9A 416 62.84 c.67.1.3 96621 1o69A 394 63.09 c.67.1.4 92560 2aefA 234 63.09 2oatA 439 63.53 c.67.1.4 34452 1rm4A 337 63.66 c.2.1.3,d.81.1.1 105000,105001 2zg5A 397 64.40 1obfO 335 64.46 c.2.1.3,d.81.1.1 86768,86769 2qytA 317 65.04 2g5cA 281 65.10 a.100.1.12,c.2.1.6 134646,134647 1a76 326 66.54 2r79A 283 67.04 1gypA 358 67.38 c.2.1.3,d.81.1.1 30004,39919 2ozpA 345 67.44 1t2dA 322 67.93 c.2.1.5,d.162.1.1 99084,99085 1fmjA 351 68.33 c.37.1.5 59879 1efdN 266 69.00 c.92.2.1 35597 1m7yA 435 69.05 c.67.1.4 78761 1njrA 284 69.69 c.50.1.2 103858 2ordA 397 70.64 2cz9A 350 70.96 1pq4A 291 71.24 c.92.2.2 94995 2c5aA 379 71.26 c.2.1.2 129894 2czcA 334 71.67 d.81.1.1 131044 2bylA 439 72.41 c.67.1.4 129490 1oj7A 408 72.79 e.22.1.2 103971 1wyuA 438 73.78 c.67.1.7 121452 1d2fA 390 74.07 c.67.1.3 34411 1pgjA 478 74.73 a.100.1.1,c.2.1.6 18783,30195 2gt1A 326 75.05 1bw0A 416 75.16 c.67.1.1 34385 2zcuA 286 76.00 1sc6A 404 76.22 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1p5hA 428 76.79 c.123.1.1 87802 1ldg 316 76.98 1ydnA 295 77.48 2jejA 358 77.55 d.240.1.1,e.8.1.7 138284,138285 1kq3A 376 77.95 e.22.1.2 68790 1gadO 330 79.54 c.2.1.3,d.81.1.1 29950,39865 1e4eA 343 83.13 c.30.1.2,d.142.1.1 59221,59222 1hyhA 309 83.54 c.2.1.5,d.162.1.1 30150,42117 2rghA 571 84.03 3caiA 406 84.33 1zd1A 284 85.14 2v6gA 364 85.46 1h72C 296 85.67 d.14.1.5,d.58.26.1 60712,60713 2a84A 300 85.78 c.26.1.4 126389 1pzgA 331 85.80 c.2.1.5,d.162.1.1 95425,95426 1a04A 215 86.02 a.4.6.2,c.23.1.1 16234,31089 1bxkA 355 86.04 c.2.1.2 29803 1s6yA 450 87.28 c.2.1.5,d.162.1.2 105314,105315 2v7pA 310 88.53 2cvzA 289 89.43 a.100.1.1,c.2.1.6 130890,130891 2fnuA 375 89.70 c.67.1.4 133831