# List of top-scoring protein chains for T0457.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2hawA 309 5.53e-15 c.107.1.1 136299 1wpnA 188 1.22e-14 c.107.1.1 114826 1i74A 309 2.55e-14 1i74A c.107.1.1 61867 2eb0A 307 2.92e-14 2iw4A 309 3.78e-14 2enxA 310 5.31e-14 1wppA 311 2.11e-13 c.107.1.1 114828 1k20A 310 3.36e-13 c.107.1.1 68027 1ir6A 424 1.78e-07 c.107.1.2 71342 2qb7A 397 4.44e-04 1wzaA 488 7.70e-02 b.71.1.1,c.1.8.1 121489,121490 1h4pA 408 2.03e+00 c.1.8.3 90617 2b3rA 134 2.36e+00 2gtlO 215 2.56e+00 b.61.7.1,g.12.1.1,h.1.32.1 135673,135674,135675 1qi9A 556 3.88e+00 1qhbA a.111.1.2 19053 2e85A 159 4.07e+00 2i8lA 156 4.07e+00 2v0cA 878 4.12e+00 1h3nA 878 4.29e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2qsfX 171 5.05e+00 1tedA 393 7.75e+00 c.95.1.2 106807 1teeA 393 7.76e+00 c.95.1.2 106811 1wm0X 292 8.06e+00 a.123.1.1 109404 1v2bA 177 8.65e+00 d.107.1.2 108279 1g19A 350 1.06e+01 2reb c.37.1.11,d.48.1.1 32284,38770 2ojhA 297 1.10e+01 1fobA 334 1.13e+01 c.1.8.3 83255 1i58A 189 1.19e+01 1b3qA d.122.1.3 61773 1i5dA 191 1.20e+01 1b3qA d.122.1.3 61783 1r3hA 260 1.21e+01 b.1.1.2,d.19.1.1 96911,96912 1oruA 195 1.28e+01 b.58.1.2 93464 1gz1A 362 1.30e+01 c.6.1.1 76405 1ocjA 362 1.30e+01 c.6.1.1 86801 1c16A 260 1.42e+01 1agdA b.1.1.2,d.19.1.1 20856,38320 1bvwA 360 1.45e+01 1bvwA c.6.1.1 30668 2bvwA 362 1.46e+01 1bvwA c.6.1.1 30666 1oc7A 364 1.51e+01 c.6.1.1 86794 2bq4A 116 1.54e+01 3c5yA 231 1.56e+01 1e27A 276 1.58e+01 1agdA b.1.1.2,d.19.1.1 20763,38271 1ktbA 405 1.63e+01 b.71.1.1,c.1.8.1 72960,72961 1fpzA 212 1.66e+01 1fpzA c.45.1.1 59976 2az4A 429 1.70e+01 d.157.1.10 127597 1mi4A 427 1.75e+01 d.68.2.2 79141 2qftA 427 1.80e+01 1g6sA 427 1.82e+01 1eps d.68.2.2 39584 1i36A 264 1.85e+01 a.100.1.8,c.2.1.6 71108,71109 2qfqA 427 1.89e+01 1vkzA 412 1.96e+01 b.84.2.1,c.30.1.1,d.142.1.2 108698,108699,108700 1p32A 209 2.02e+01 1p32A d.25.1.1 38379 1epsA 427 2.10e+01 d.68.2.2 39586 2an1A 292 2.26e+01 2yvkA 374 2.28e+01 1noyA 388 2.29e+01 1clqA c.55.3.5 33713 1xx7A 184 2.41e+01 a.211.1.1 116143 1q36A 427 2.57e+01 d.68.2.2 95662 1m4rA 151 2.61e+01 a.26.1.3 84799 1hv8A 367 2.65e+01 1hv8A c.37.1.19,c.37.1.19 32405,32406 2j22A 148 2.66e+01 2g6jA 420 2.68e+01 1zzqA 420 2.74e+01 d.174.1.1 125914 1p6kA 421 2.74e+01 d.174.1.1 94177 2g6mA 420 2.75e+01 d.174.1.1 134711 1mmvA 419 2.75e+01 d.174.1.1 91317 1om4A 422 2.75e+01 d.174.1.1 87067 1p6iA 421 2.76e+01 d.174.1.1 94173 1bn7A 294 2.76e+01 1bn6A c.69.1.8 34677 1vagA 420 2.76e+01 d.174.1.1 108469 1iz4A 249 2.76e+01 d.131.1.2,d.131.1.2 83832,83833 1ykbA 142 2.86e+01 a.26.1.3 123503 1zzuA 420 2.86e+01 1shyB 551 2.96e+01 b.69.12.1,g.16.2.1 105565,105566 1cqwA 295 2.96e+01 1b6g c.69.1.8 34679 2ablA 163 3.00e+01 b.34.2.1,d.93.1.1 24481,40525 2ev1A 222 3.10e+01 2raqA 97 3.15e+01 1ge8A 249 3.22e+01 1plq d.131.1.2,d.131.1.2 41398,41399 2dldA 337 3.26e+01 1dxy c.2.1.4,c.23.12.1 30099,31359 1dbxA 158 3.31e+01 1dbuA d.116.1.1 40928 2jgzB 260 3.34e+01 2uzxB 727 3.34e+01 3be4A 217 3.44e+01 1zd1A 284 3.55e+01 1s70B 299 3.57e+01 d.211.1.1 105317 3cocA 249 3.58e+01 1sybA 150 3.67e+01 b.40.1.1 24820 2b9rA 269 3.68e+01 2v7bA 529 3.74e+01 2oepA 349 3.76e+01 2ijcA 145 3.82e+01 a.152.1.3 137465 1pskH 209 3.84e+01 1igtB b.1.1.1,b.1.1.2 20139,21169 1hm7A 336 3.89e+01 a.128.1.4 76719 2pshA 319 3.91e+01 1ps1A 337 3.91e+01 1ps1A a.128.1.4 19450 1bisA 166 3.91e+01 1b9dA c.55.3.2 33650 2o01D 138 3.98e+01 2o39A 197 4.00e+01 2psfA 310 4.12e+01 2herA 368 4.13e+01 2psoA 237 4.14e+01 2psdA 318 4.15e+01 2numA 141 4.15e+01 2psjA 319 4.15e+01 2o4dA 165 4.16e+01 a.152.1.3 138907 2a9fA 398 4.18e+01 1vp8A 201 4.23e+01 c.49.1.2 113947 1bywA 110 4.34e+01 1bywA d.110.3.6 40912 1hyvA 166 4.39e+01 1b9dA c.55.3.2 61424 2po1B 277 4.40e+01 1hmcA 148 4.51e+01 1hmcB a.26.1.2 16867 2imjA 166 4.78e+01 1iz5A 249 4.90e+01 d.131.1.2,d.131.1.2 83834,83835 2ooeA 530 5.00e+01 3bg9A 718 5.04e+01 3bg3A 718 5.08e+01 3codA 249 5.21e+01 2gzvA 114 5.31e+01 2dylA 318 5.34e+01 1lv5A 580 5.35e+01 c.55.3.5,e.8.1.1 84719,84720 1nk4A 580 5.40e+01 c.55.3.5,e.8.1.1 91923,91924 1u4bA 580 5.40e+01 c.55.3.5,e.8.1.1 107664,107665 2a5gA 175 5.40e+01 c.37.1.8 126174 2hhvA 580 5.40e+01 c.55.3.5,e.8.1.1 136514,136515 2hviA 580 5.41e+01 c.55.3.5,e.8.1.1 136808,136809 2hhwA 580 5.41e+01 c.55.3.5,e.8.1.1 136516,136517 2atyA 376 5.45e+01 2hfpA 282 5.60e+01 a.123.1.1 136388 2q4zA 312 5.61e+01 2fnoA 248 5.66e+01 a.45.1.1,c.47.1.5 133821,133822 2zchH 229 5.66e+01 2nwfA 141 5.67e+01 2zckH 230 5.68e+01 2q8aH 210 5.68e+01 3cj1A 456 5.76e+01 1faiH 221 5.79e+01 1mfa b.1.1.1,b.1.1.2 19845,20949 2f7lA 455 5.80e+01 2f0vA 149 5.81e+01 2q8bH 210 5.84e+01 2h9fA 396 5.91e+01 1ps9A 671 6.01e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2bdpA 580 6.04e+01 1xwl c.55.3.5,e.8.1.1 33709,43002 2nukA 141 6.07e+01 2nvgA 141 6.09e+01 1cg9A 277 6.13e+01 b.1.1.2,d.19.1.1 90419,90420 2a5dA 175 6.18e+01 c.37.1.8 126172 1cf8H 218 6.18e+01 1igtB b.1.1.1,b.1.1.2 20379,21371 1rjlB 221 6.19e+01 b.1.1.1,b.1.1.2 111823,111824 1e0sA 174 6.23e+01 1hurA c.37.1.8 32057 2j37W 504 6.24e+01 1cicB 217 6.33e+01 1igtB b.1.1.1,b.1.1.2 19965,21025 2iswA 323 6.34e+01 1pffA 331 6.35e+01 c.67.1.3 104143 2ebdA 309 6.49e+01 1o1xA 155 6.54e+01 c.121.1.1 86553 1ki9A 192 6.58e+01 c.37.1.1 84404 2hkfH 218 6.60e+01 1mreH 215 6.63e+01 1mfa b.1.1.1,b.1.1.2 20019,21073 1v31A 93 6.65e+01 a.42.1.1 100276 2q51A 315 6.66e+01 2jekA 145 6.75e+01 a.255.1.1 138286 2o4hA 313 6.78e+01 1ve5A 311 6.83e+01 c.79.1.1 120013 2hqrA 223 6.89e+01 2iccA 119 7.03e+01 2ivyA 101 7.14e+01 1b9dA 163 7.14e+01 1b9dA c.55.3.2 33649 2ch4A 320 7.16e+01 b.40.7.1,d.122.1.3 130447,130448 2i8eA 101 7.20e+01 2qjpC 179 7.28e+01 2enuA 177 7.28e+01 2b4jA 166 7.29e+01 c.55.3.2 127833 1nbvH 219 7.39e+01 1igtB b.1.1.1,b.1.1.2 19899,20993 3nucA 149 7.45e+01 b.40.1.1 24836 1bizA 166 7.48e+01 1b9dA c.55.3.2 33652 2ca9A 148 7.56e+01 2v17H 222 7.77e+01 1ja8A 198 7.79e+01 1avmA a.2.11.1,d.44.1.1 62813,62814 1y10A 407 7.80e+01 1em1A 198 7.81e+01 1avmA a.2.11.1,d.44.1.1 15752,38711 1bi4B 160 7.81e+01 1b9dA c.55.3.2 33667 1k74D 283 7.86e+01 a.123.1.1 68252 1ll6A 392 7.92e+01 c.1.8.5,d.26.3.1 78077,78078 2onhA 543 7.93e+01