# This file is the result of combining several RDB files, specifically # T0457.t04.dssp-ebghstl.rdb (weight 1.53986) # T0457.t04.stride-ebghtl.rdb (weight 1.24869) # T0457.t04.str2.rdb (weight 1.54758) # T0457.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0457.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0457 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0457.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1674 # # ============================================ # Comments from T0457.t04.stride-ebghtl.rdb # ============================================ # TARGET T0457 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0457.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1674 # # ============================================ # Comments from T0457.t04.str2.rdb # ============================================ # TARGET T0457 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0457.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1674 # # ============================================ # Comments from T0457.t04.alpha.rdb # ============================================ # TARGET T0457 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0457.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1674 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0091 0.7055 0.2853 2 V 0.0061 0.9261 0.0678 3 E 0.0056 0.9461 0.0483 4 I 0.0050 0.9536 0.0414 5 F 0.0047 0.9594 0.0359 6 N 0.0047 0.9604 0.0349 7 E 0.0047 0.9607 0.0347 8 I 0.0047 0.9590 0.0363 9 M 0.0047 0.9600 0.0354 10 Q 0.0047 0.9597 0.0356 11 R 0.0049 0.9543 0.0409 12 V 0.0050 0.9314 0.0637 13 K 0.0058 0.7963 0.1979 14 E 0.0122 0.3776 0.6102 15 A 0.0605 0.0744 0.8650 16 E 0.0655 0.0394 0.8950 17 T 0.4623 0.0130 0.5247 18 I 0.9111 0.0036 0.0853 19 I 0.9305 0.0034 0.0661 20 I 0.9283 0.0032 0.0685 21 H 0.8796 0.0089 0.1115 22 R 0.6422 0.0148 0.3431 23 H 0.2934 0.0290 0.6776 24 V 0.1573 0.0452 0.7975 25 R 0.0934 0.0238 0.8828 26 P 0.0563 0.0617 0.8820 27 D 0.0862 0.0673 0.8465 28 P 0.0199 0.5875 0.3926 29 D 0.0122 0.7695 0.2183 30 A 0.0080 0.9238 0.0682 31 Y 0.0051 0.9502 0.0447 32 G 0.0048 0.9558 0.0395 33 S 0.0047 0.9598 0.0355 34 Q 0.0047 0.9609 0.0344 35 L 0.0046 0.9612 0.0341 36 G 0.0047 0.9611 0.0343 37 L 0.0047 0.9604 0.0349 38 K 0.0046 0.9612 0.0342 39 L 0.0047 0.9599 0.0354 40 Y 0.0047 0.9584 0.0369 41 L 0.0048 0.9524 0.0428 42 E 0.0056 0.9241 0.0703 43 R 0.0097 0.8307 0.1597 44 K 0.0374 0.5795 0.3831 45 F 0.0612 0.0281 0.9107 46 P 0.0336 0.0835 0.8829 47 E 0.0748 0.0682 0.8570 48 K 0.3544 0.0301 0.6155 49 N 0.7314 0.0095 0.2591 50 I 0.8958 0.0044 0.0999 51 Y 0.8859 0.0058 0.1083 52 A 0.7824 0.0087 0.2089 53 T 0.3551 0.0465 0.5984 54 G 0.0883 0.0464 0.8653 55 E 0.1387 0.0501 0.8112 56 A 0.1761 0.0411 0.7828 57 E 0.0937 0.0475 0.8588 58 P 0.0237 0.3034 0.6729 59 S 0.0320 0.2773 0.6907 60 L 0.0906 0.3156 0.5937 61 S 0.1167 0.2277 0.6555 62 F 0.1594 0.2765 0.5640 63 I 0.1075 0.3406 0.5519 64 G 0.0509 0.4450 0.5041 65 D 0.0494 0.4362 0.5144 66 L 0.0881 0.3672 0.5447 67 D 0.0705 0.3056 0.6238 68 E 0.1014 0.3907 0.5080 69 I 0.1323 0.2936 0.5740 70 D 0.1345 0.2029 0.6626 71 D 0.0607 0.4214 0.5179 72 S 0.0627 0.4075 0.5297 73 V 0.0892 0.2927 0.6182 74 Y 0.0992 0.1568 0.7439 75 S 0.0943 0.1179 0.7878 76 D 0.1134 0.0595 0.8271 77 A 0.2704 0.0369 0.6926 78 L 0.8691 0.0037 0.1272 79 V 0.9287 0.0033 0.0680 80 I 0.9338 0.0032 0.0630 81 V 0.9277 0.0033 0.0690 82 C 0.8748 0.0061 0.1192 83 D 0.6073 0.0107 0.3820 84 T 0.1547 0.0467 0.7986 85 A 0.0695 0.0982 0.8323 86 N 0.0633 0.0991 0.8376 87 A 0.0570 0.1378 0.8053 88 P 0.0484 0.2585 0.6930 89 R 0.0840 0.3035 0.6125 90 I 0.0736 0.2605 0.6659 91 D 0.0508 0.3454 0.6037 92 D 0.0166 0.8064 0.1771 93 Q 0.0185 0.8430 0.1385 94 R 0.0319 0.8206 0.1476 95 Y 0.0215 0.8121 0.1664 96 L 0.0290 0.7197 0.2513 97 N 0.0483 0.2222 0.7295 98 G 0.0476 0.0217 0.9307 99 Q 0.1457 0.0080 0.8463 100 S 0.6703 0.0093 0.3204 101 L 0.9200 0.0033 0.0767 102 I 0.9282 0.0033 0.0685 103 K 0.9322 0.0032 0.0646 104 I 0.8873 0.0069 0.1058 105 D 0.6515 0.0067 0.3418 106 H 0.2503 0.0314 0.7183 107 H 0.1067 0.0261 0.8672 108 P 0.0902 0.0814 0.8284 109 A 0.0666 0.1558 0.7775 110 T 0.0494 0.2879 0.6628 111 D 0.0519 0.3074 0.6407 112 Q 0.0798 0.3257 0.5945 113 Y 0.1198 0.1404 0.7397 114 G 0.0908 0.0804 0.8288 115 D 0.1187 0.0806 0.8007 116 V 0.2483 0.1037 0.6480 117 N 0.4363 0.0960 0.4677 118 F 0.7211 0.0486 0.2303 119 V 0.6659 0.0298 0.3044 120 N 0.2968 0.0246 0.6787 121 T 0.0435 0.1914 0.7652 122 E 0.0340 0.1886 0.7775 123 A 0.0598 0.2687 0.6715 124 S 0.0469 0.4916 0.4616 125 S 0.0398 0.7825 0.1777 126 T 0.0083 0.9294 0.0623 127 S 0.0050 0.9565 0.0385 128 E 0.0047 0.9612 0.0342 129 I 0.0047 0.9613 0.0340 130 I 0.0047 0.9603 0.0350 131 F 0.0047 0.9611 0.0342 132 D 0.0047 0.9614 0.0340 133 F 0.0047 0.9578 0.0374 134 I 0.0048 0.9521 0.0431 135 S 0.0050 0.9296 0.0654 136 H 0.0061 0.8756 0.1183 137 F 0.0181 0.7321 0.2497 138 N 0.0182 0.4730 0.5088 139 D 0.0173 0.4819 0.5008 140 L 0.0375 0.4188 0.5437 141 S 0.0531 0.2075 0.7393 142 I 0.0742 0.0998 0.8260 143 I 0.0884 0.0458 0.8658 144 D 0.0603 0.0320 0.9077 145 E 0.0053 0.9280 0.0667 146 H 0.0055 0.9386 0.0559 147 V 0.0051 0.9495 0.0453 148 A 0.0050 0.9555 0.0395 149 R 0.0050 0.9579 0.0371 150 V 0.0050 0.9570 0.0379 151 L 0.0053 0.9562 0.0385 152 Y 0.0053 0.9531 0.0416 153 L 0.0071 0.9441 0.0488 154 G 0.0097 0.9203 0.0700 155 I 0.0243 0.8710 0.1047 156 V 0.0479 0.7745 0.1776 157 G 0.0722 0.6178 0.3100 158 D 0.0962 0.3707 0.5331 159 T 0.0789 0.2338 0.6873 160 G 0.0692 0.1685 0.7623 161 R 0.1335 0.2043 0.6622 162 F 0.2139 0.1781 0.6080 163 L 0.2680 0.1083 0.6238 164 F 0.1516 0.0584 0.7900 165 S 0.0515 0.1152 0.8333 166 N 0.0504 0.0646 0.8850 167 T 0.1593 0.0307 0.8101 168 S 0.0795 0.0210 0.8995 169 P 0.0154 0.8091 0.1755 170 H 0.0110 0.8436 0.1454 171 T 0.0121 0.8866 0.1013 172 M 0.0096 0.9333 0.0570 173 E 0.0087 0.9331 0.0582 174 V 0.0073 0.9363 0.0563 175 A 0.0058 0.9473 0.0469 176 S 0.0051 0.9548 0.0401 177 Q 0.0052 0.9495 0.0453 178 L 0.0057 0.9247 0.0697 179 L 0.0081 0.8045 0.1874 180 A 0.0136 0.5590 0.4274 181 Y 0.0525 0.1997 0.7478 182 P 0.0469 0.0940 0.8591 183 F 0.0646 0.1065 0.8289 184 N 0.0936 0.0731 0.8333 185 H 0.0146 0.7387 0.2467 186 N 0.0086 0.8851 0.1062 187 A 0.0061 0.9249 0.0690 188 E 0.0061 0.9370 0.0569 189 L 0.0060 0.9436 0.0504 190 N 0.0063 0.9299 0.0638 191 K 0.0070 0.8806 0.1124 192 M 0.0149 0.8017 0.1833 193 S 0.0349 0.5504 0.4147 194 E 0.0262 0.3671 0.6067 195 K 0.0343 0.2417 0.7240 196 D 0.0869 0.0360 0.8771 197 P 0.0068 0.7157 0.2775 198 K 0.0092 0.6876 0.3031 199 L 0.0154 0.7646 0.2200 200 M 0.0390 0.7433 0.2177 201 P 0.0227 0.7845 0.1928 202 F 0.0139 0.8882 0.0979 203 Q 0.0097 0.9206 0.0697 204 G 0.0073 0.9175 0.0752 205 Y 0.0073 0.9163 0.0764 206 V 0.0096 0.9038 0.0866 207 L 0.0122 0.8697 0.1180 208 Q 0.0173 0.7646 0.2182 209 N 0.0263 0.6080 0.3658 210 F 0.0846 0.5003 0.4151 211 E 0.2221 0.3983 0.3795 212 L 0.3855 0.3275 0.2870 213 S 0.2872 0.2392 0.4736 214 D 0.2028 0.1893 0.6078 215 S 0.1000 0.2261 0.6739 216 H 0.0928 0.1502 0.7569 217 E 0.2705 0.1256 0.6039 218 Y 0.6379 0.0848 0.2773 219 C 0.7447 0.0658 0.1895 220 Q 0.8409 0.0537 0.1054 221 I 0.8522 0.0620 0.0857 222 K 0.8324 0.0771 0.0905 223 I 0.7776 0.0849 0.1375 224 T 0.5770 0.1715 0.2515 225 N 0.2550 0.5153 0.2297 226 D 0.1589 0.5988 0.2423 227 V 0.1414 0.6754 0.1832 228 L 0.1484 0.6633 0.1883 229 K 0.1457 0.6044 0.2500 230 Q 0.0878 0.5481 0.3641 231 F 0.0934 0.2701 0.6365 232 D 0.0768 0.0946 0.8286 233 I 0.1126 0.0776 0.8097 234 Q 0.0786 0.0479 0.8736 235 P 0.0219 0.5572 0.4208 236 N 0.0215 0.6916 0.2869 237 E 0.0246 0.8071 0.1683 238 A 0.0094 0.9209 0.0697 239 S 0.0054 0.9438 0.0508 240 Q 0.0066 0.9496 0.0438 241 F 0.0055 0.9524 0.0421 242 V 0.0058 0.9517 0.0426 243 N 0.0053 0.9522 0.0424 244 T 0.0053 0.9477 0.0470 245 V 0.0065 0.9372 0.0563 246 A 0.0144 0.9025 0.0831 247 D 0.0134 0.8624 0.1242 248 I 0.0191 0.7741 0.2067 249 S 0.0447 0.2490 0.7063 250 G 0.0403 0.0280 0.9317 251 L 0.1523 0.0112 0.8365 252 K 0.4837 0.0051 0.5112 253 I 0.9012 0.0038 0.0950 254 W 0.9270 0.0032 0.0697 255 M 0.9328 0.0031 0.0641 256 F 0.9240 0.0036 0.0724 257 G 0.9084 0.0042 0.0873 258 V 0.8393 0.0084 0.1523 259 D 0.5129 0.0177 0.4694 260 E 0.1373 0.0467 0.8160 261 G 0.0448 0.0291 0.9261 262 D 0.0782 0.0336 0.8883 263 Q 0.7596 0.0079 0.2325 264 I 0.9200 0.0034 0.0766 265 R 0.9279 0.0036 0.0685 266 C 0.9250 0.0035 0.0716 267 R 0.9194 0.0036 0.0769 268 I 0.8994 0.0044 0.0961 269 R 0.7726 0.0112 0.2163 270 S 0.3892 0.0253 0.5855 271 K 0.0652 0.0741 0.8607 272 G 0.0583 0.0327 0.9090 273 I 0.2470 0.0126 0.7404 274 T 0.1895 0.0123 0.7982 275 I 0.0060 0.9424 0.0516 276 N 0.0052 0.9589 0.0360 277 D 0.0049 0.9601 0.0350 278 V 0.0052 0.9592 0.0356 279 A 0.0052 0.9508 0.0440 280 N 0.0057 0.9277 0.0666 281 Q 0.0097 0.8508 0.1394 282 F 0.0622 0.4659 0.4719 283 G 0.0481 0.0484 0.9035 284 G 0.0664 0.0394 0.8942 285 G 0.0916 0.0445 0.8639 286 G 0.0890 0.0629 0.8482 287 H 0.0691 0.1869 0.7440 288 P 0.0245 0.4365 0.5390 289 N 0.0373 0.3694 0.5933 290 A 0.1969 0.3355 0.4676 291 S 0.2973 0.1902 0.5125 292 G 0.4357 0.0710 0.4933 293 V 0.6082 0.0271 0.3646 294 S 0.6244 0.0188 0.3568 295 V 0.3545 0.0607 0.5849 296 Y 0.1499 0.1179 0.7321 297 S 0.1304 0.1402 0.7293 298 W 0.0419 0.6010 0.3570 299 D 0.0275 0.5892 0.3833 300 E 0.0314 0.6150 0.3536 301 F 0.0055 0.9079 0.0866 302 E 0.0047 0.9581 0.0372 303 E 0.0047 0.9601 0.0353 304 L 0.0047 0.9604 0.0349 305 A 0.0046 0.9613 0.0341 306 Q 0.0046 0.9611 0.0342 307 A 0.0047 0.9609 0.0344 308 L 0.0047 0.9592 0.0361 309 R 0.0047 0.9583 0.0370 310 Q 0.0049 0.9529 0.0422 311 K 0.0055 0.9364 0.0581 312 L 0.0065 0.8843 0.1092 313 L 0.0104 0.7229 0.2667 314 E 0.0157 0.5780 0.4062 315 H 0.0241 0.4913 0.4846 316 H 0.0406 0.4242 0.5353 317 H 0.0702 0.2968 0.6330 318 H 0.0650 0.2000 0.7350 319 H 0.0635 0.0894 0.8471 320 H 0.0489 0.0423 0.9089