# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.61e-28 c.107.1.1 68027 1i74A 309 1.20e-27 c.107.1.1 61867 2eb0A 307 1.79e-22 1wpnA 188 3.69e-20 c.107.1.1 114826 1ir6A 424 3.20e-10 c.107.1.2 71342 2qb7A 397 1.42e-08 1uwcA 261 1.839 c.69.1.17 100101 2q28A 564 3.188 1tib 269 3.221 2bjhA 260 3.751 2djiA 590 4.533 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1jpkA 388 4.794 c.1.22.1 67026 1zcjA 463 4.947 2q71A 356 7.635 1uswA 260 8.272 c.69.1.17 99895 1sviA 195 8.871 c.37.1.8 106048 3brsA 289 8.989 1r8eA 278 9.090 a.6.1.3,d.60.1.1 104843,104844 1yt8A 539 9.746 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1d2mA 665 9.833 c.37.1.19,c.37.1.19 32417,32418 2c31A 568 10.11 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1v8bA 479 11.34 c.2.1.4,c.23.12.3 113564,113565 1ra0A 430 13.59 b.92.1.2,c.1.9.5 111756,111757 1gt6A 269 15.06 c.69.1.17 76342 1xwfA 431 15.24 c.2.1.4,c.23.12.3 122392,122393 2bm8A 236 17.42 c.66.1.50 128771 8abpA 306 18.72 c.93.1.1 35647 3cogA 403 20.42 1xqwA 293 20.48 2cyaA 364 22.46 8abp 306 22.54 3bzwA 274 23.20 1qz9A 416 23.44 c.67.1.3 96621 2fz4A 237 23.94 c.37.1.19 134419 2ejaA 338 25.40 1th8B 116 26.06 c.13.2.1 106909 1eejA 216 26.36 c.47.1.9,d.17.3.1 33057,38071 2o35A 105 27.27 1c4oA 664 27.35 c.37.1.19,c.37.1.19 32415,32416 2o2iA 300 28.84 1poxA 585 29.72 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1e5eA 404 31.26 c.67.1.3 59265 2yyyA 343 34.02 1lfwA 470 35.10 c.56.5.4,d.58.19.1 77942,77943 1fc4A 401 35.48 c.67.1.4 59760 2fv2A 268 36.17 1jeoA 180 39.61 c.80.1.3 66611 1mtzA 293 39.61 c.69.1.7 79467 1gpjA 404 39.92 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1cl1A 395 40.49 c.67.1.3 34395 1sxjA 511 41.40 a.80.1.1,c.37.1.20 106081,106082 1b4aA 149 42.05 a.4.5.3,d.74.2.1 16088,39721 2ez9A 603 42.40 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 3b9pA 297 42.57 2psdA 318 44.63 1uirA 314 45.67 c.66.1.17 99429 2oq1A 254 46.37 d.93.1.1,d.93.1.1 139220,139221 1abaA 87 48.32 c.47.1.1 32760 1cr6B 554 49.12 c.69.1.11,c.108.1.2 34688,43338 1gm5A 780 50.63 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1j6uA 469 52.09 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2z61A 370 55.30 2p97A 201 55.51 1m3sA 186 55.91 c.80.1.3 78573 2chgA 226 58.03 1bn7A 294 58.61 c.69.1.8 34677 1puiA 210 59.36 c.37.1.8 88292 2i3dA 249 59.72 1fcjA 322 61.16 c.79.1.1 35289 1vjgA 218 62.69 c.23.10.6 100810 2nw0A 189 63.14 1h75A 81 67.32 c.47.1.1 60716 1ybhA 590 67.41 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2qvbA 297 68.96 1c4xA 285 69.49 c.69.1.10 34684 3c5vA 316 70.79 1vmeA 410 71.08 c.23.5.1,d.157.1.3 108893,108894 2cxxA 190 72.71 c.37.1.8 131013 1pjqA 457 73.12 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ynuA 473 75.51 c.67.1.4 123762 2r6r1 338 75.54 1qwgA 251 75.54 c.1.27.1 96473 1tdj 514 76.11 2jfgA 445 84.28 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1iz7A 295 84.93 c.69.1.8 76982 1u2eA 289 85.18 2qsfX 171 85.54 1jf9A 408 87.50 c.67.1.3 62931 1rhs 296 87.63 2bykB 128 88.09 a.22.1.3 129487 2og1A 286 89.09 1xo0A 324 89.59 a.60.9.1,d.163.1.1 115674,115675 1pv1A 299 89.94 c.69.1.34 111639