# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.04e-29 c.107.1.1 68027 1i74A 309 2.14e-28 c.107.1.1 61867 2eb0A 307 6.84e-23 1wpnA 188 1.53e-20 c.107.1.1 114826 1ir6A 424 5.48e-11 c.107.1.2 71342 2qb7A 397 5.17e-09 1uwcA 261 1.628 c.69.1.17 100101 2djiA 590 1.730 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2q28A 564 1.956 2c31A 568 2.036 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1yt8A 539 2.389 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1tib 269 2.934 2ez9A 603 3.187 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1v8bA 479 4.039 c.2.1.4,c.23.12.3 113564,113565 2bjhA 260 4.410 1poxA 585 4.628 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1uswA 260 5.393 c.69.1.17 99895 1d2mA 665 6.707 c.37.1.19,c.37.1.19 32417,32418 1jpkA 388 8.671 c.1.22.1 67026 1xqwA 293 9.128 2oq1A 254 10.14 d.93.1.1,d.93.1.1 139220,139221 1r8eA 278 10.67 a.6.1.3,d.60.1.1 104843,104844 1gt6A 269 10.89 c.69.1.17 76342 1ybhA 590 14.20 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1zcjA 463 14.96 1ra0A 430 15.62 b.92.1.2,c.1.9.5 111756,111757 3brsA 289 15.93 2fz4A 237 16.11 c.37.1.19 134419 2q71A 356 16.55 1mtzA 293 17.99 c.69.1.7 79467 1th8B 116 18.60 c.13.2.1 106909 2bm8A 236 20.38 c.66.1.50 128771 1xwfA 431 20.45 c.2.1.4,c.23.12.3 122392,122393 1tdj 514 20.84 1uirA 314 22.20 c.66.1.17 99429 1c4oA 664 23.43 c.37.1.19,c.37.1.19 32415,32416 1e5eA 404 24.02 c.67.1.3 59265 1b4aA 149 24.64 a.4.5.3,d.74.2.1 16088,39721 3cogA 403 24.68 2o2iA 300 24.71 2yyyA 343 25.56 1sviA 195 27.37 c.37.1.8 106048 3b9pA 297 29.65 1eejA 216 31.82 c.47.1.9,d.17.3.1 33057,38071 8abpA 306 32.33 c.93.1.1 35647 8abp 306 33.28 2p97A 201 33.47 1vmeA 410 35.24 c.23.5.1,d.157.1.3 108893,108894 1sxjA 511 36.92 a.80.1.1,c.37.1.20 106081,106082 1cl1A 395 38.23 c.67.1.3 34395 2psdA 318 38.59 1xwiA 322 38.63 1a81A 254 39.32 d.93.1.1,d.93.1.1 40507,40508 3c3yA 237 40.32 1iz7A 295 40.60 c.69.1.8 76982 1j6uA 469 43.19 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2o35A 105 44.25 1bn7A 294 45.44 c.69.1.8 34677 1gc0A 398 45.65 c.67.1.3 70168 2qvbA 297 46.54 1r26A 125 46.99 c.47.1.1 96847 1w5fA 353 47.52 c.32.1.1,d.79.2.1 114247,114248 1lfwA 470 47.80 c.56.5.4,d.58.19.1 77942,77943 1qz9A 416 48.45 c.67.1.3 96621 2bykB 128 49.53 a.22.1.3 129487 2i3dA 249 49.80 1fohA 664 50.45 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1pn0A 665 50.74 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1fc4A 401 50.76 c.67.1.4 59760 2ejaA 338 51.85 1gpjA 404 52.70 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1fcjA 322 52.97 c.79.1.1 35289 1vjgA 218 53.65 c.23.10.6 100810 2p71A 132 54.08 a.39.2.1 139516 3bzwA 274 54.69 1lgyA 269 56.55 c.69.1.17 34758 1oasA 322 57.80 c.79.1.1 35293 1rkuA 206 58.96 c.108.1.11 97627 1jeoA 180 60.00 c.80.1.3 66611 2chgA 226 60.92 1vjoA 393 61.25 c.67.1.3 100827 1cv2A 296 61.34 c.69.1.8 34680 1m3sA 186 61.36 c.80.1.3 78573 2ihtA 573 62.48 1dnpA 471 63.05 a.99.1.1,c.28.1.1 18775,31630 1rq2A 382 64.81 c.32.1.1,d.79.2.1 105048,105049 1tibA 269 66.88 c.69.1.17 34738 1c4xA 285 67.52 c.69.1.10 34684 3d64A 494 68.03 1c1dA 355 68.22 c.2.1.7,c.58.1.1 30270,33918 2nw0A 189 69.05 2cyaA 364 70.52 1ibjA 464 70.66 c.67.1.3 62162 1pv1A 299 72.98 c.69.1.34 111639 2dxnA 274 73.65 1gpl 432 74.72 3c2bA 221 74.76 1ojqA 212 76.46 d.166.1.1 93146 2dxqA 150 80.01 1sxjC 340 83.65 a.80.1.1,c.37.1.20 106085,106086 1h75A 81 85.15 c.47.1.1 60716 2r6r1 338 86.43 1j1iA 296 88.96 c.69.1.10 83977