# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.25e-30 c.107.1.1 68027 1i74A 309 1.16e-29 c.107.1.1 61867 2eb0A 307 1.17e-24 1wpnA 188 3.00e-21 c.107.1.1 114826 1ir6A 424 7.99e-11 c.107.1.2 71342 2qb7A 397 3.33e-09 2q28A 564 1.596 1yt8A 539 2.589 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2djiA 590 3.319 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2q71A 356 3.887 1jpkA 388 4.340 c.1.22.1 67026 1sviA 195 4.757 c.37.1.8 106048 1eejA 216 4.798 c.47.1.9,d.17.3.1 33057,38071 2c31A 568 4.966 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2p97A 201 5.044 1zcjA 463 5.522 2oq1A 254 6.163 d.93.1.1,d.93.1.1 139220,139221 2ez9A 603 6.504 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2ejaA 338 6.744 1uwcA 261 6.831 c.69.1.17 100101 1tib 269 7.083 1r8eA 278 8.432 a.6.1.3,d.60.1.1 104843,104844 1poxA 585 8.924 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1v8bA 479 9.000 c.2.1.4,c.23.12.3 113564,113565 2bjhA 260 9.817 3brsA 289 10.80 1puiA 210 11.34 c.37.1.8 88292 1ra0A 430 12.32 b.92.1.2,c.1.9.5 111756,111757 1lfwA 470 16.34 c.56.5.4,d.58.19.1 77942,77943 3bzwA 274 18.29 1gt6A 269 19.45 c.69.1.17 76342 8abpA 306 20.40 c.93.1.1 35647 1b4aA 149 20.85 a.4.5.3,d.74.2.1 16088,39721 1a81A 254 22.84 d.93.1.1,d.93.1.1 40507,40508 1ybhA 590 23.25 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1vmeA 410 23.27 c.23.5.1,d.157.1.3 108893,108894 2cyaA 364 23.46 1xqwA 293 29.11 1fcjA 322 30.81 c.79.1.1 35289 1uswA 260 32.41 c.69.1.17 99895 2bm8A 236 32.92 c.66.1.50 128771 1xwfA 431 34.78 c.2.1.4,c.23.12.3 122392,122393 1mtzA 293 35.21 c.69.1.7 79467 1th8B 116 36.46 c.13.2.1 106909 2o35A 105 37.10 1gpjA 404 38.08 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1oywA 523 39.06 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1uirA 314 42.00 c.66.1.17 99429 1oasA 322 42.09 c.79.1.1 35293 2psdA 318 43.49 2fz4A 237 44.36 c.37.1.19 134419 2cxxA 190 44.43 c.37.1.8 131013 2jfgA 445 46.72 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1qz9A 416 50.05 c.67.1.3 96621 2nw0A 189 53.32 2yyyA 343 56.76 8abp 306 57.52 2fv2A 268 58.89 1qwgA 251 59.31 c.1.27.1 96473 1rkuA 206 59.63 c.108.1.11 97627 1vmkA 277 61.79 c.56.2.1 113680 1fc4A 401 62.42 c.67.1.4 59760 1sxjA 511 67.30 a.80.1.1,c.37.1.20 106081,106082 1cl1A 395 67.46 c.67.1.3 34395 1e5eA 404 69.42 c.67.1.3 59265 2chgA 226 71.37 2bykB 128 72.37 a.22.1.3 129487 1cg2A 393 72.62 c.56.5.4,d.58.19.1 33844,39360 2p71A 132 72.92 a.39.2.1 139516 1cukA 203 76.27 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2o2iA 300 77.23 2d5cA 263 78.83 1j6uA 469 79.42 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1aiaA 396 81.25 c.67.1.1 34306 2ffiA 288 86.08 c.1.9.15 133385 2z61A 370 86.68 2dri 271 86.72 3cogA 403 88.12 2p5mA 83 88.49 1efaA 333 89.19 a.35.1.5,c.93.1.1 17106,35691 2jbmA 299 89.30 1jeoA 180 89.64 c.80.1.3 66611 1c4xA 285 89.76 c.69.1.10 34684