# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 3.55e-30 c.107.1.1 68027 1i74A 309 4.51e-29 c.107.1.1 61867 2eb0A 307 1.27e-23 1wpnA 188 7.71e-21 c.107.1.1 114826 1ir6A 424 1.82e-10 c.107.1.2 71342 2qb7A 397 5.52e-09 2ez9A 603 0.5162 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2djiA 590 0.5194 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1yt8A 539 1.928 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uwcA 261 2.658 c.69.1.17 100101 1jpkA 388 2.753 c.1.22.1 67026 2q71A 356 3.184 2bjhA 260 3.257 2oq1A 254 4.413 d.93.1.1,d.93.1.1 139220,139221 1zcjA 463 5.793 1tib 269 6.127 2p97A 201 6.347 1sviA 195 6.622 c.37.1.8 106048 2q28A 564 7.020 1ozhA 566 7.997 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1ybhA 590 8.942 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1uswA 260 9.398 c.69.1.17 99895 1poxA 585 10.03 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 3bzwA 274 10.45 1th8B 116 14.42 c.13.2.1 106909 1v8bA 479 16.70 c.2.1.4,c.23.12.3 113564,113565 1b4aA 149 16.84 a.4.5.3,d.74.2.1 16088,39721 1ra0A 430 17.38 b.92.1.2,c.1.9.5 111756,111757 1d2mA 665 17.44 c.37.1.19,c.37.1.19 32417,32418 2uz1A 563 18.00 1gt6A 269 18.27 c.69.1.17 76342 2c31A 568 18.87 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1xqwA 293 19.92 1gpjA 404 21.65 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1eejA 216 22.63 c.47.1.9,d.17.3.1 33057,38071 1a81A 254 23.07 d.93.1.1,d.93.1.1 40507,40508 2nw0A 189 23.87 2ejaA 338 24.95 2o2iA 300 25.68 2o35A 105 26.01 2psdA 318 26.31 2ihtA 573 27.37 1lfwA 470 27.89 c.56.5.4,d.58.19.1 77942,77943 1r8eA 278 29.25 a.6.1.3,d.60.1.1 104843,104844 1mtzA 293 30.55 c.69.1.7 79467 3b9pA 297 30.66 2qvbA 297 37.60 2bm8A 236 39.43 c.66.1.50 128771 1qz9A 416 42.01 c.67.1.3 96621 1ynuA 473 43.31 c.67.1.4 123762 1fcjA 322 45.52 c.79.1.1 35289 1vmeA 410 46.78 c.23.5.1,d.157.1.3 108893,108894 1efaA 333 48.11 a.35.1.5,c.93.1.1 17106,35691 1xwfA 431 52.60 c.2.1.4,c.23.12.3 122392,122393 1c4oA 664 54.26 c.37.1.19,c.37.1.19 32415,32416 2bykB 128 55.94 a.22.1.3 129487 1knwA 425 56.95 b.49.2.3,c.1.6.1 90969,90970 1rhs 296 60.09 1cv2A 296 60.89 c.69.1.8 34680 2fz4A 237 64.39 c.37.1.19 134419 1pfkA 320 67.22 c.89.1.1 35575 1b24A 188 68.12 d.95.2.1,d.95.2.1 40573,40574 1iz7A 295 71.01 c.69.1.8 76982 1puiA 210 71.98 c.37.1.8 88292 1qwgA 251 72.72 c.1.27.1 96473 2hdhA 293 73.62 a.100.1.3,c.2.1.6 18795,30199 2qsfX 171 73.63 2p5mA 83 74.64 2cyaA 364 75.01 1umkA 275 75.13 b.43.4.2,c.25.1.1 113312,113313 2ftsA 419 75.91 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1cr6B 554 76.91 c.69.1.11,c.108.1.2 34688,43338 1jtkA 136 79.39 c.97.1.1 71862 1j6uA 469 80.74 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1xwiA 322 83.35 2ag9A 164 84.29 1r6uA 437 84.52 c.26.1.1 97163 2qe8A 343 87.18 1rkuA 206 87.75 c.108.1.11 97627