# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 2.46e-24 c.107.1.1 68027 1i74A 309 1.19e-22 c.107.1.1 61867 2eb0A 307 1.26e-18 1wpnA 188 2.86e-16 c.107.1.1 114826 1ir6A 424 3.96e-08 c.107.1.2 71342 2qb7A 397 3.63e-07 1zcjA 463 0.03594 2ez9A 603 0.7232 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1ozhA 566 1.838 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2o7cA 398 3.422 1hnjA 317 3.736 c.95.1.2,c.95.1.2 35969,35970 1eejA 216 4.183 c.47.1.9,d.17.3.1 33057,38071 1a81A 254 4.883 d.93.1.1,d.93.1.1 40507,40508 2djiA 590 5.039 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1sxjA 511 5.141 a.80.1.1,c.37.1.20 106081,106082 2bjhA 260 5.441 1yt8A 539 5.522 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fq6A 415 6.092 c.67.1.3 133939 2ffiA 288 6.179 c.1.9.15 133385 1uwcA 261 6.304 c.69.1.17 100101 2dr1A 386 6.383 2napA 723 6.930 b.52.2.2,c.81.1.1 26926,35334 1gc0A 398 6.948 c.67.1.3 70168 2yw2A 424 7.634 1hn9A 317 7.664 c.95.1.2,c.95.1.2 35977,35978 7aatA 401 7.803 c.67.1.1 34250 2hdhA 293 8.169 a.100.1.3,c.2.1.6 18795,30199 3bu3A 306 8.682 2ihtA 573 9.916 1kqfB 294 9.944 d.58.1.5,f.23.22.1 75900,75901 3cogA 403 9.95 1akaA 401 10.21 c.67.1.1 34258 2ajfA 597 10.97 d.92.1.5 126882 2q28A 564 12.06 2cunA 410 14.04 1tib 269 15.70 1cv2A 296 16.17 c.69.1.8 34680 1jpkA 388 17.05 c.1.22.1 67026 1bn6A 294 17.07 c.69.1.8 34678 2vafA 378 17.26 1ei6A 406 17.76 c.76.1.4 90443 2q71A 356 18.42 1m3sA 186 18.43 c.80.1.3 78573 2oq1A 254 18.47 d.93.1.1,d.93.1.1 139220,139221 2i5gA 325 19.03 1sviA 195 19.59 c.37.1.8 106048 1lk9A 448 19.74 c.67.1.1 78057 2i6uA 307 19.88 2nxwA 565 20.42 1ra0A 430 21.05 b.92.1.2,c.1.9.5 111756,111757 1ji2A 585 21.21 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1gpl 432 22.92 8abpA 306 23.55 c.93.1.1 35647 2q4aA 330 24.21 b.82.2.8 139839 1pvdA 537 24.89 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1vemA 516 24.89 b.3.1.1,c.1.8.1 120021,120022 1qwgA 251 25.05 c.1.27.1 96473 1qf6A 642 25.27 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2dvzA 314 26.41 1gq2A 555 26.94 c.2.1.7,c.58.1.3 70308,70309 2pqmA 343 27.09 1z45A 699 27.12 b.30.5.4,c.2.1.2 124427,124428 2fnuA 375 28.00 c.67.1.4 133831 1dqrA 557 28.80 c.80.1.2 35305 1mioA 534 29.09 c.92.2.3 35601 2hoxA 427 29.51 c.67.1.1 136644 1th8B 116 29.52 c.13.2.1 106909 1t9bA 677 30.45 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 1fc6A 388 30.78 b.36.1.3,c.14.1.2 64738,64739 2fgeA 995 32.13 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1q74A 303 32.32 c.134.1.1 96019 3bijA 285 32.95 1z63A 500 33.78 c.37.1.19,c.37.1.19 124502,124503 2al2A 436 33.94 c.1.11.1,d.54.1.1 126953,126954 2p97A 201 34.24 3c86A 328 34.44 2ohhA 404 34.92 1mtzA 293 36.11 c.69.1.7 79467 1pc3A 350 36.18 c.94.1.1 104102 8abp 306 36.29 1xi9A 406 36.33 c.67.1.1 115355 2f4nA 273 37.77 1reqB 637 37.98 c.1.19.1,c.23.6.1 29621,31248 1a1vA 476 38.53 c.37.1.14,c.37.1.14 32467,32468 1vm7A 311 38.69 c.72.1.1 108884 2b3yA 888 39.19 c.8.2.1,c.83.1.1 127803,127804 1vmeA 410 39.55 c.23.5.1,d.157.1.3 108893,108894 2e9xC 219 42.30 1eblA 317 42.63 c.95.1.2,c.95.1.2 35973,35974 1qycA 308 44.66 c.2.1.2 96581 1in4A 334 45.02 a.4.5.11,c.37.1.20 62597,62598 1gt6A 269 45.54 c.69.1.17 76342 1hl9A 449 45.72 b.71.1.3,c.1.8.11 90650,90651 1zejA 293 46.82 1pjrA 724 47.27 c.37.1.19,c.37.1.19 32391,32392 1b4aA 149 48.81 a.4.5.3,d.74.2.1 16088,39721 3c1oA 321 49.67 1iqpA 327 50.85 a.80.1.1,c.37.1.20 62649,62650 2dxnA 274 51.48 1pjqA 457 51.83 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 3beoA 375 53.39 1lam 484 53.54 1pvvA 315 53.94 c.78.1.1,c.78.1.1 95190,95191 1wqaA 455 54.95 1jyeA 349 57.59 c.93.1.1 67455 1cjcA 460 57.96 c.3.1.1,c.4.1.1 30319,30604 1mj5A 302 58.03 c.69.1.8 91285 1yaaA 412 58.51 c.67.1.1 34280 1xwl 580 59.62 1j32A 388 60.08 c.67.1.1 77067 1efaA 333 60.99 a.35.1.5,c.93.1.1 17106,35691 1lv7A 257 61.91 c.37.1.20 78232 2p5zX 491 62.72 1ti6A 875 63.60 b.52.2.2,c.81.1.1 106974,106975 1ir3A 306 64.01 d.144.1.7 41702 3bzwA 274 64.06 1ecxA 384 65.67 c.67.1.3 34431 1puiA 210 65.88 c.37.1.8 88292 1ve5A 311 67.10 c.79.1.1 120013 2shpA 525 67.28 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2z61A 370 67.62 3c10A 423 67.89 1f0yA 302 68.12 a.100.1.3,c.2.1.6 18793,30197 1g38A 393 68.27 c.66.1.27,d.287.1.1 111567,111568 2i7vA 459 68.53 1kblA 873 68.76 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 3clqA 421 69.04 1fc4A 401 69.80 c.67.1.4 59760 1q06A 135 69.86 a.6.1.3 95493 1bn7A 294 69.99 c.69.1.8 34677 1x1iA 752 72.03 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2d2jA 329 72.10 c.1.9.3 131175 1k6wA 426 72.80 b.92.1.2,c.1.9.5 68236,68237 1y0pA 571 72.98 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2g30A 258 74.00 b.1.10.1,d.105.1.1 134546,134547 3b9pA 297 74.57 1mqoA 227 75.15 d.157.1.1 103846 2z07A 420 76.24 1elyA 449 76.40 c.76.1.1 35028 2scpA 174 77.66 a.39.1.5 17256 1r1hA 696 77.99 d.92.1.4 104756 1ybhA 590 78.24 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1qh0A 295 78.62 b.43.4.2,c.25.1.1 68891,68892 1x6vA 630 79.80 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2v3vA 723 79.89 2liv 344 79.95 2r6r1 338 80.54 1ydnA 295 80.88 1eg5A 384 81.96 c.67.1.3 34429 1heiA 451 82.30 c.37.1.14,c.37.1.14 32463,32464 2o35A 105 82.30 2epjA 434 83.34 1v71A 323 84.12 c.79.1.1 119859 2oryA 346 84.98 2rdyA 803 85.12 1v8bA 479 85.31 c.2.1.4,c.23.12.3 113564,113565 1jscA 630 85.31 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1ynuA 473 85.49 c.67.1.4 123762 1o6zA 303 86.18 c.2.1.5,d.162.1.1 81107,81108 1qpbA 563 87.58 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1cl2A 395 88.01 c.67.1.3 34397 1b26A 416 88.62 c.2.1.7,c.58.1.1 30232,33880 1lgyA 269 89.04 c.69.1.17 34758 2vhxA 377 89.68