# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 4.45e-30 c.107.1.1 68027 1i74A 309 6.95e-29 c.107.1.1 61867 2eb0A 307 8.79e-24 1wpnA 188 7.38e-21 c.107.1.1 114826 1ir6A 424 2.76e-10 c.107.1.2 71342 2qb7A 397 3.49e-09 2ez9A 603 0.2859 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2djiA 590 0.3731 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1yt8A 539 0.7856 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uwcA 261 2.161 c.69.1.17 100101 2bjhA 260 2.347 2p97A 201 2.726 1ybhA 590 2.930 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1tib 269 3.139 1zcjA 463 3.163 1jpkA 388 3.826 c.1.22.1 67026 2q71A 356 4.474 1poxA 585 4.628 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1ozhA 566 4.885 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2q28A 564 7.100 1sviA 195 7.143 c.37.1.8 106048 1uswA 260 7.602 c.69.1.17 99895 2oq1A 254 8.531 d.93.1.1,d.93.1.1 139220,139221 1eejA 216 8.593 c.47.1.9,d.17.3.1 33057,38071 1ra0A 430 10.11 b.92.1.2,c.1.9.5 111756,111757 1gt6A 269 10.64 c.69.1.17 76342 1d2mA 665 11.58 c.37.1.19,c.37.1.19 32417,32418 1v8bA 479 12.75 c.2.1.4,c.23.12.3 113564,113565 2c31A 568 16.00 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 1xqwA 293 17.20 2uz1A 563 18.10 2o35A 105 19.88 1th8B 116 20.09 c.13.2.1 106909 1mtzA 293 22.62 c.69.1.7 79467 1r8eA 278 23.91 a.6.1.3,d.60.1.1 104843,104844 1qz9A 416 24.36 c.67.1.3 96621 1gpjA 404 24.61 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2ihtA 573 26.31 1cv2A 296 29.06 c.69.1.8 34680 1ynuA 473 29.77 c.67.1.4 123762 2bm8A 236 30.14 c.66.1.50 128771 3bzwA 274 30.55 2o2iA 300 31.09 1lfwA 470 31.62 c.56.5.4,d.58.19.1 77942,77943 2psdA 318 31.71 2nw0A 189 31.73 1a81A 254 31.77 d.93.1.1,d.93.1.1 40507,40508 2ejaA 338 33.45 3b9pA 297 35.70 1xwfA 431 37.51 c.2.1.4,c.23.12.3 122392,122393 1rhs 296 37.79 2hdhA 293 37.86 a.100.1.3,c.2.1.6 18795,30199 1b4aA 149 37.91 a.4.5.3,d.74.2.1 16088,39721 2qvbA 297 45.21 2fz4A 237 48.34 c.37.1.19 134419 1c4oA 664 54.64 c.37.1.19,c.37.1.19 32415,32416 1fcjA 322 55.13 c.79.1.1 35289 1j6uA 469 56.69 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1i9sA 210 57.60 c.45.1.1 62099 2rslA 140 60.45 c.53.1.1 33345 1r6uA 437 60.72 c.26.1.1 97163 1efaA 333 62.27 a.35.1.5,c.93.1.1 17106,35691 1qlwA 328 66.31 c.69.1.15 34722 1akyA 220 68.18 c.37.1.1,g.41.2.1 31896,45197 2v78A 313 68.18 1cr6B 554 68.32 c.69.1.11,c.108.1.2 34688,43338 2d6yA 202 68.91 a.4.1.9,a.121.1.1 131313,131314 2qsfX 171 70.93 1vmeA 410 70.93 c.23.5.1,d.157.1.3 108893,108894 1iz7A 295 72.58 c.69.1.8 76982 1lgyA 269 73.34 c.69.1.17 34758 1rkuA 206 74.16 c.108.1.11 97627 1pfkA 320 75.24 c.89.1.1 35575 1qf9A 194 79.77 c.37.1.1 31848 3c2bA 221 80.21 2p5mA 83 81.34 1oywA 523 81.45 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1sxjA 511 83.28 a.80.1.1,c.37.1.20 106081,106082 1vmkA 277 84.24 c.56.2.1 113680 2fv2A 268 84.83 1oasA 322 85.10 c.79.1.1 35293 1cqwA 295 86.68 c.69.1.8 34679 2cyaA 364 87.23 1uirA 314 89.14 c.66.1.17 99429