# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 7.60e-34 c.107.1.1 68027 1i74A 309 2.00e-32 c.107.1.1 61867 2eb0A 307 1.97e-26 1wpnA 188 4.75e-22 c.107.1.1 114826 1ir6A 424 1.11e-11 c.107.1.2 71342 2qb7A 397 1.58e-09 1yt8A 539 1.145 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1jpkA 388 2.334 c.1.22.1 67026 2q71A 356 2.615 1vmeA 410 4.592 c.23.5.1,d.157.1.3 108893,108894 1zcjA 463 4.827 2p97A 201 5.592 2ejaA 338 9.676 2djiA 590 11.74 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2bjhA 260 13.44 1vjoA 393 13.88 c.67.1.3 100827 2oq1A 254 14.65 d.93.1.1,d.93.1.1 139220,139221 1uwcA 261 15.77 c.69.1.17 100101 1poxA 585 16.59 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1tib 269 17.20 3cogA 403 21.40 1eejA 216 22.90 c.47.1.9,d.17.3.1 33057,38071 1r8eA 278 23.21 a.6.1.3,d.60.1.1 104843,104844 1ynuA 473 23.98 c.67.1.4 123762 1qz9A 416 25.02 c.67.1.3 96621 1b4aA 149 25.25 a.4.5.3,d.74.2.1 16088,39721 1sviA 195 26.06 c.37.1.8 106048 2ez9A 603 26.36 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1v8bA 479 26.91 c.2.1.4,c.23.12.3 113564,113565 1e5eA 404 28.18 c.67.1.3 59265 2fz4A 237 31.32 c.37.1.19 134419 1aiaA 396 33.12 c.67.1.1 34306 1cv2A 296 34.24 c.69.1.8 34680 1ra0A 430 38.39 b.92.1.2,c.1.9.5 111756,111757 2jfgA 445 39.19 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1a81A 254 40.96 d.93.1.1,d.93.1.1 40507,40508 3bzwA 274 43.44 1th8B 116 44.18 c.13.2.1 106909 1xqwA 293 49.39 1bn7A 294 50.12 c.69.1.8 34677 1efaA 333 50.74 a.35.1.5,c.93.1.1 17106,35691 1puiA 210 52.41 c.37.1.8 88292 1cl1A 395 52.88 c.67.1.3 34395 2p5mA 83 55.24 2gb3A 409 55.26 c.67.1.1 134903 1pinA 163 55.94 b.72.1.1,d.26.1.1 27802,38431 1xwiA 322 56.14 1rhs 296 56.94 1qs2A 401 58.03 d.166.1.1,d.166.1.1 42268,42269 1vmkA 277 58.85 c.56.2.1 113680 1gt6A 269 59.05 c.69.1.17 76342 2q28A 564 59.91 1lfwA 470 61.55 c.56.5.4,d.58.19.1 77942,77943 2o35A 105 62.06 2bykB 128 62.47 a.22.1.3 129487 1sxjA 511 65.08 a.80.1.1,c.37.1.20 106081,106082 1arhA 396 68.03 c.67.1.1 34321 1qwgA 251 68.08 c.1.27.1 96473 1uswA 260 69.73 c.69.1.17 99895 1ibjA 464 72.62 c.67.1.3 62162 1gm5A 780 73.55 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 3cdxA 354 77.61 2cyaA 364 77.61 1jftA 340 82.49 a.35.1.5,c.93.1.1 66652,66653 1ybhA 590 82.95 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 2qe8A 343 83.59 1pvdA 537 85.12 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1ajsA 412 85.45 c.67.1.1 34276 2prbA 196 86.18 1fzqA 181 87.05 c.37.1.8 32060 2odmA 91 87.06 2h2wA 312 87.80 2fv2A 268 89.43 1ym5A 300 89.94