# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1k20A 310 1.96e-33 c.107.1.1 68027 1i74A 309 3.96e-32 c.107.1.1 61867 2eb0A 307 1.53e-26 1wpnA 188 9.23e-23 c.107.1.1 114826 1ir6A 424 5.12e-12 c.107.1.2 71342 2qb7A 397 5.41e-10 1yt8A 539 0.9050 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1jpkA 388 2.491 c.1.22.1 67026 2q71A 356 3.470 1r8eA 278 8.871 a.6.1.3,d.60.1.1 104843,104844 1uwcA 261 9.044 c.69.1.17 100101 1vmeA 410 10.10 c.23.5.1,d.157.1.3 108893,108894 2ejaA 338 10.35 2djiA 590 10.53 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2ez9A 603 12.13 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1sviA 195 12.71 c.37.1.8 106048 2oq1A 254 13.04 d.93.1.1,d.93.1.1 139220,139221 2bjhA 260 13.80 3bzwA 274 15.48 1zcjA 463 17.83 1th8B 116 18.00 c.13.2.1 106909 1a81A 254 18.30 d.93.1.1,d.93.1.1 40507,40508 2p97A 201 18.46 1lfwA 470 19.88 c.56.5.4,d.58.19.1 77942,77943 1tib 269 20.76 1v8bA 479 21.50 c.2.1.4,c.23.12.3 113564,113565 1oasA 322 25.31 c.79.1.1 35293 1ra0A 430 26.39 b.92.1.2,c.1.9.5 111756,111757 1vjoA 393 27.81 c.67.1.3 100827 1d2mA 665 27.98 c.37.1.19,c.37.1.19 32417,32418 2cyaA 364 31.45 1fcjA 322 32.14 c.79.1.1 35289 2q28A 564 32.19 3cogA 403 33.71 2bykB 128 34.37 a.22.1.3 129487 2o35A 105 36.04 1uswA 260 38.50 c.69.1.17 99895 1puiA 210 39.08 c.37.1.8 88292 1eejA 216 40.87 c.47.1.9,d.17.3.1 33057,38071 1sxjA 511 41.13 a.80.1.1,c.37.1.20 106081,106082 2fv2A 268 42.62 1poxA 585 45.45 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1j6uA 469 45.71 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2fz4A 237 46.07 c.37.1.19 134419 1gm5A 780 46.80 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1efaA 333 49.03 a.35.1.5,c.93.1.1 17106,35691 3brsA 289 49.54 1xwiA 322 50.28 2qe8A 343 57.00 1zckA 154 58.73 1khdA 345 60.91 a.46.2.1,c.27.1.1 77400,77401 1ybhA 590 62.68 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1e5eA 404 65.92 c.67.1.3 59265 1qz9A 416 67.60 c.67.1.3 96621 1ynuA 473 68.48 c.67.1.4 123762 2dxqA 150 68.98 1b24A 188 70.44 d.95.2.1,d.95.2.1 40573,40574 1qwgA 251 72.88 c.1.27.1 96473 1vquA 374 73.99 2cxxA 190 74.47 c.37.1.8 131013 1gt6A 269 76.47 c.69.1.17 76342 2bm8A 236 76.60 c.66.1.50 128771 2odmA 91 77.65 1gpjA 404 80.39 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xwfA 431 80.53 c.2.1.4,c.23.12.3 122392,122393 1utgA 70 81.25 a.101.1.1 18813 1ojqA 212 81.54 d.166.1.1 93146 1pjqA 457 81.93 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2c31A 568 84.15 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 3c3kA 285 84.79 1xqwA 293 85.26 1bn7A 294 89.07 c.69.1.8 34677